F07041

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07041

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
fruit (PO:0009001)
  • increased thickness (PATO:0000591)
    (Silique::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07041

Determination of introduced cDNA(s)

  • RAFL06-84-G05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-84-G05 - Resource: pdz87675

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-84-G05 - 3 prime EST 
    GGAGAAATAA TTGGTAAACT TTTGCGGTAC ATACGGTTTG GGTCAAGTTA 
    CAAACGGATA AACCGGTATA GAATACACAG AGTTTTTGAA TTCTCCCATT 
    TAAGCTGCAA TTTCTTCGAC CTCCATCCAA TGCATAGCTT GTTGGTCGAT 
    ATGTTGGCGT AATTGACTTT TGCGAACCGG ACCACAACCG GGTATCGAGT 
    CTTAGGGTCC TGATCAAGCG GGAACAACTG ATCCAAAGTT CTTGAACCAA 
    TAGGATTCTC TCCTTACAAT CTTGACCTTA CACCCTCTCT TAGGACCAAT 
    CGGTGGTGGC TTGGGTTTGG TGGCAGCTAC CTCCATCCGG AGCAGCGGCA 
    GCTGCCGGAG AATCTTTTGA AGAAGAGGAA GCCGGAGCAG GATCTTCGGC 
    TGCCCTGA

    Gene models with high sequence identity

    1. AT4G28750.1 [+] show detail - Photosystem I reaction centre subunit IV / PsaE protein
      E-value: 0; Score: 97.55

    AT4G28750.1

    Model type
    Protein coding
    Short Description
    Photosystem I reaction centre subunit IV / PsaE protein
    Curator Summary
    mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Subunit E of Photosystem I
    Computational Description
    PSA E1 KNOCKOUT (PSAE-1); FUNCTIONS IN: catalytic activity; INVOLVED IN: response to salt stress; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit IV/PsaE (InterPro:IPR003375), Electron transport accessory protein (InterPro:IPR008990); BEST Arabidopsis thaliana protein match is: photosystem I subunit E-2 (TAIR:AT2G20260.1); Has 449 Blast hits to 449 proteins in 133 species: Archae - 0; Bacteria - 180; Metazoa - 5; Fungi - 0; Plants - 90; Viruses - 3; Other Eukaryotes - 171 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR