F07121

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07121

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07121

Determination of introduced cDNA(s)

  • RAFL06-84-F14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-84-F14 - Resource: pda03871

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-84-F14 - full reading
    CTCTTTCCCT CTCTCTCTCT CTCCAAACCA GTCCTACTTC TCTCTCTAGA 
    AACCTAGGGA AGAAGAAGAA GACGGTGAAG CGAGCGATGT CTTCGGACGA
    CGAAGGAAGA GAGGAGTATC TCTTCAAGAT TGTTGTTATC GGCGACTCTG
    CCGTCGGTAA ATCTAATCTT CTATCTCGTT ACGCACGTAA CGAGTTCAGC
    GCTAACTCCA AGGCGACGAT CGGAGTCGAG TTTCAGACGC AGAGCATGGA
    GATTGAAGGT AAAGAGGTCA AGGCTCAGAT TTGGGACACT GCTGGTCAGG
    AGCGTTTCCG TGCCGTCACT TCCGCTTATT ACCGTGGCGC TGTCGGTGCC
    CTCGTCGTTT ACGACATTAC CCGCCGCACC ACTTTCGAAA GCGTTGGACG
    TTGGCTCGAT CAGCTTAAGA TCCATTCGGA TACGACGGTG GCGAGAATGC
    TGGTGGGGAA CAAGTGTGAT CTAGAAAACA TAAGAGCAGT GAGCGTGGAG
    GAAGGAAAGG CTCTAGCCGA AGAGGAAGGA CTCTTCTTTG TGGAAACATC
    GGCTCTTGAT TCGACTAATG TTAAAACAGC TTTCGAGATG GTGATACTTG
    ATATCTACAA TAACGTGAGC CGTAAGCAAC TCAACTCAGA TACTTATAAA
    GACGAACTCA CCGTGAATCG GGTAAGTCTT GTTAAGGATG ATAACTCTGC
    CTCCAAACAA AGCTCTGGTT TCTCTTGTTG TTCTTCCACT TGATGATATA
    CCACACCAAA ATAATCCTTT TTTATTTCTC ACAACTGTAA CTTTATTATA
    TAAATTTTTG TTTTTTTCTT TGACTCATGG AAGAAAAGAA ATTCATGAAC
    TATAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT1G05810.1 [+] show detail - RAB GTPase homolog A5E
      E-value: 0; Score: 99.88

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Ras small GTPase, Ras type 5.9e-28
    HMMSmart Ras small GTPase, Rab type 4.6e-105
    HMMSmart Small GTPase, Rho type 0.000000000019
    HMMSmart Ran GTPase 0.00022
    superfamily P-loop containing nucleoside triphosphate hyd 1.7e-60
    ProfileScan Small GTPase 34.267
    HMMPfam Ras 1.5e-60
    HMMTigr Small GTP-binding protein 1.6e-33
    HMMPanther Rab11-related 9.5e-83
    HMMPanther RAS-RELATED GTPASE 9.5e-83
    Gene3D no description 4.9e-61
    FPrintScan Ras GTPase 7.9e-39
    FPrintScan Ras GTPase 7.9e-39
    FPrintScan Ras GTPase 7.9e-39
    FPrintScan Ras GTPase 7.9e-39
    FPrintScan Ras GTPase 7.9e-39

    See the detailed result >

    AT1G05810.1

    Model type
    Protein coding
    Short Description
    RAB GTPase homolog A5E
    Computational Description
    RAB GTPase homolog A5E (RABA5E); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5D (TAIR:AT2G31680.1); Has 27587 Blast hits to 27548 proteins in 749 species: Archae - 23; Bacteria - 136; Metazoa - 14522; Fungi - 3761; Plants - 3260; Viruses - 20; Other Eukaryotes - 5865 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR