F07122

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07122

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07122

Determination of introduced cDNA(s)

  • RAFL03-06-H07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-06-H07 - Resource: pda00196

    full reading [+] show sequence

    Nucleotide sequence: RAFL03-06-H07 - full reading 
    AGGTCGAGAA ATCTCCCTCT AGGGTTTCTT TGATCAAACC AGAGAGCCGT 
    CAGGGAGAGC AAAACAAAGA TCGGAGAAGA TGAAGACGAT TCTTTCTTCC 
    GAAACGATGG ACATCCCCGA CAGTGTTACC ATCAAGGTTC ACGCTAAAGT 
    GATCGAAGTC GAAGGACCTC GCGGGAAGCT TGTTCGCGAT TTCAAGCATC 
    TCAACCTCGA TTTCCAGCTG ATCAAGGATC CAGAGACTGG AAAGAAGAAG 
    CTTAAGATCG ATTCGTGGTT TGGAACACGC AAAACCAGCG CCTCCATCAG 
    AACCGCTCTT AGCCACGTCG ATAACTTGAT CTCCGGTGTT ACCAGAGGTT 
    TCCGTTACAA GATGAGGTTC GTGTACGCCC ATTTTCCCAT CAACGCCTCC 
    ATCGGCGGTG ACGGAAAGTC TATCGAGATC CGTAACTTCC TTGGCGAGAA 
    GAAGGTGAGG AAGGTAGAGA TGTTGGATGG TGTAACCATT GTTCGATCTG 
    AGAAGGTGAA GGATGAGATT GTTCTTGACG GTAACGACAT CGAGCTTGTT 
    TCAAGGTCAT GCGCTTTGAT CAACCAGAAA TGTCACGTGA AGAAGAAGGA 
    TATCAGGAAG TTTCTTGATG GTATCTATGT TAGCGAGAAA AGCAAGATCG 
    TAGAGGAAGA ATGAATGCCC ATATCATCGT CTTAGCTCCT ATTTCTTGTC 
    TTTTGAATGT TAGTTTCGTT TTATGGACCA AATCCACCGG TGTTGCAAAA 
    CTCTGGCTAT CCCTTGTTCC CTTTTTGTGT TCGAGATTTT ATTTACTTAT 
    GCACAAGTTT TGGAGACGAG CTATCATTTT CACCTTTGCT TAATTAAATC 
    ATATCGTGTG AATTTGGGAT TGTTCTGGAT TTGGCATTGT GGGTTGTGCA 
    TTCAAAATTG ATACTTCAGT CACTAAACT

    Gene models with high sequence identity

    1. AT1G33140.1 [+] show detail - Ribosomal protein L6 family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribosomal protein L6, alpha-beta domain 3.4e-30
    superfamily Ribosomal protein L6, alpha-beta domain 8.5e-15
    HMMPfam Ribosomal protein L6, alpha-beta domain 6.5e-07
    HMMPfam Ribosomal protein L6, alpha-beta domain 2.1e-14
    Gene3D Ribosomal protein L6, alpha-beta domain 2.3e-14
    Gene3D Ribosomal protein L6, alpha-beta domain 2.8e-36
    PatternScan Ribosomal protein L6, conserved site-2 0
    HMMPanther 60S RIBOSOMAL PROTEIN L9 2.8e-132
    HMMPanther Ribosomal protein L6 2.8e-132

    See the detailed result >

    AT1G33140.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L6 family
    Curator Summary
    Encodes ribosomal protein L9. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.
    Computational Description
    PIGGYBACK2 (PGY2); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: adaxial/abaxial pattern formation, translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site-2 (InterPro:IPR002359); BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family (TAIR:AT1G33120.1); Has 1644 Blast hits to 1643 proteins in 495 species: Archae - 312; Bacteria - 169; Metazoa - 422; Fungi - 179; Plants - 339; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR