F07131

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07131

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F07131

Determination of introduced cDNA(s)

  • RAFL05-11-L07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-11-L07 - Resource: pda01269

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-11-L07 - full reading 
    ATTCTCACTT ACTTCTTTTC TTTTTTTGTG TTCTTGTTTA GAAGAAGCAA 
    TGGCCACTTC AGCAATCCAA CACTCTTCTT TCGCTGGCCA AACGACCCTA 
    AAGCCATCCA ACGATCTCCT CCGCAAAATC GGAGCCTCCA ATGGCGGTGG 
    CCGCATCATC ATGCGTCGTA CCGTCAAGTC TACTCCTCAG AGCATCTGGT 
    ACGGACCAGA CCGTCCCAAA TACCTAGGAC CATTTTCCGA AAACACACCA 
    TCATACCTAA CCGGAGAATA CCCTGGAGAC TACGGTTGGG ACACCGCTGG 
    TCTCTCAGCC GATCCAGAAA CATTCGCAAA GAATCGTGAG CTCGAAGTGA 
    TCCACAGTAG ATGGGCAATG TTGGGAGCTT TAGGCTGCAC CTTCCCTGAA 
    ATTCTCTCAA AAAACGGAGT CAAATTCGGT GAAGCCGTGT GGTTCAAGGC 
    AGGATCTCAA ATCTTCTCAG AAGGAGGGCT TGACTACCTC GGAAACCCTA 
    ACTTGATCCA CGCGCAAAGC ATATTAGCTA TATGGGCGTG TCAAGTTGTG 
    CTAATGGGAT TCATTGAAGG GTACAGAATC GGAGGTGGTC CTCTTGGGGA 
    AGGGCTTGAC CCGCTTTACC CGGGCGGGGC CTTCGACCCG TTGAACTTAG 
    CGGAGGATCC AGAAGCGTTT TCAGAGTTGA AAGTGAAGGA GCTTAAAAAC 
    GGTCGTCTTG CTATGTTCTC AATGTTTGGA TTCTTTGTCC AAGCCATAGT 
    TACCGGTAAA GGTCCGATCG AAAATCTGTT CGATCACATT GCAGACCCTG 
    TGGCTAACAA TGCTTGGGCT TACGCCACCA ACTTCGTCCC CGGAAAATAG 
    AGTTTGATCG GATAATTTAT GTAAATTATA TCTTTTAAAC ATTTATCAAT 
    GCATTAAAGT TATCCCT

    Gene models with high sequence identity

    1. AT3G27690.1 [+] show detail - photosystem II light harvesting complex gene 2.3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Chloroa_b-bind 4.9e-49
    HMMPanther Chlorophyll A-B binding protein 1.7e-189
    superfamily Chlorophyll a-b binding protein 1.4e-80

    See the detailed result >

    AT3G27690.1

    Model type
    Protein coding
    Short Description
    photosystem II light harvesting complex gene 2.3
    Curator Summary
    Encodes Lhcb2.4. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.
    Computational Description
    photosystem II light harvesting complex gene 2.3 (LHCB2.3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.1 (TAIR:AT2G05100.1); Has 2373 Blast hits to 2310 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2058; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR