F07140

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07140

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07140

Determination of introduced cDNA(s)

  • RAFL06-10-O24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-10-O24 - Resource: pda03060

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-10-O24 - full reading 
    AAAAAAAAAA AACAGAGAGA GAGAACAACA ACCAAACACT CATTTCTCCA 
    CATCTTGAGA GAAAAAAACA GAGCAGGTAT ATTAGAGATC TCATGGCGAT 
    GGCGGTCTCC GGAGCTGTCC TCAGTGGGCT TGGTTCTTCG TTCCTCACCG 
    GAGGCAAGAG AGGTGCCACC GCATTGGCAA GCGGCGTAGG CACTGGAGCT 
    CAGAGAGTTG GCAGGAAAAC TCTTATTGTC GCTGCTGCGG CTGCTCAGCC 
    TAAGAAATCT TGGATCCCTG CCGTTAAAGG TGGTGGCAAC TTCCTTGACC 
    CTGAATGGCT CGATGGCTCG CTACCAGGAG ATTTCGGGTT CGACCCATTG 
    GGTTTGGGGA AAGACCCGGC TTTTCTGAAA TGGTACAGAG AGGCTGAGCT 
    GATCCATGGC CGATGGGCGA TGGCAGCGGT TCTTGGGATC TTCGTCGGCC 
    AGGCCTGGAG CGGTGTGGCA TGGTTTGAAG CTGGAGCCCA GCCAGACGCG 
    ATCGCTCCCT TCTCGTTCGG GTCGCTTCTT GGAACCCAAT TGCTTCTCAT 
    GGGTTGGGTG GAGAGCAAAC GATGGGTCGA TTTCTTCAAC CCGGATTCTC 
    AATCGGTTGA GTGGGCAACG CCATGGTCGA AGACCGCCGA GAATTTCGCG 
    AACTATACCG GCGATCAGGG ATACCCCGGT GGGAGATTCT TCGATCCGTT 
    GGGTCTCGCC GGGAAAAACC GCGACGGTGT TTATGAGCCG GACTTTGAGA 
    AGCTGGAGAG GCTGAAATTG GCAGAGATTA AGCACTCGAG GCTCGCAATG 
    GTTGCCATGT TGATCTTTTA CTTTGAGGCC GGGCAGGGGA AAACGCCTCT 
    CGGTGCTCTT GGTTTGTGAG AAAACGGCAT GATGTTTTTG ATTCTGTAGA 
    TACAATTTCT CTTCCAAAAA CCTAATGTTT CTCTTCTTCA ATGTGACATT 
    TGGGAAAAGA TCATCAAACC ATTGCTATAA ATGTAAAATG AAATCGT

    Gene models with high sequence identity

    1. AT1G15820.1 [+] show detail - light harvesting complex photosystem II subunit 6
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Chlorophyll A-B binding protein 7e-97
    HMMPfam Chloroa_b-bind 8.9e-46
    superfamily Chlorophyll a-b binding protein 2e-43

    See the detailed result >

    AT1G15820.1

    Model type
    Protein coding
    Short Description
    light harvesting complex photosystem II subunit 6
    Curator Summary
    Lhcb6 protein (Lhcb6), light harvesting complex of photosystem II.
    Computational Description
    light harvesting complex photosystem II subunit 6 (LHCB6); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, nonphotochemical quenching; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 6 (TAIR:AT1G19150.1); Has 2316 Blast hits to 2191 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1959; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR