F07144

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07144

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07144

Determination of introduced cDNA(s)

  • RAFL09-89-M10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-89-M10 - Resource: pda06940

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-89-M10 - full reading 
    AATTTTCCTT TTCTCCGATC AATTCCAAAA CCCTACTTCA ACCCTGCGAT 
    TCATTCATCA TTCACAGAGT TTGAAGAAAA CGCCGAAATC GGAAATGGCG 
    TCTATTGTTC TTCGATCTCG CCTGTTGCCA AGATTAGCAA AGCTCAGATC 
    TCGTAATCTG AGATGTTTCT CTGCGGAAGC ATCTTCGACG AATTCTACAT 
    CTAGGTATTC GGGAGTCACC TCTACCCAGT CGATGTTTTC TGATTTTCCA 
    CCGCCAAATC AGCCGCCACC TCCTCCTCCT CCTCAAGTGG AAGCTGCTGC 
    CGCGGCTGCG ACGGGAAAGG AGAGGAAAGG TCTTAAGTAT CTTGGTTACG 
    CACTCCTCTG GGCACTCACT GGTGCTACCG CTGCTACTGG TTACGCAAGT 
    TTTGCTTACA CGATAGATGA AGTGAATGAA AAGACTAAGG CGTTCCGAGA 
    ATCAGCTACG AAGACACCAG TTATTAAATC TTCTGGCATT GATGTGATTG 
    ATAAATATCA GACTAAGTTG TACTCTGCTG CAATGACAGG TTCTGCTAGA 
    GCCATTGATA AGTATTTAGA GCTTAGGGAA ATTGTGGAGG AACAAGTGAA 
    AGGCTTCACG GAACCTCTCT CGGAAAAGCT TCTTCCGGAT CTGCACCCCG 
    CAGAACAGCA TGTCTTCACT CTAGTTCTTG ATTTAAATGA GACACTGCTT 
    TACACTGACT GGAAGCGGGA AAGAGGGTGG AGGACATTCA AAAGACCAGG 
    TGTCGATGCA TTCTTGGAGC ATCTTGGGAA ATTCTATGAG ATTGTCGTGT 
    ATTCTGACCA GATGGAGATG TATGTACTCC CGGTCTGTGA GAAATTAGAC 
    CCAAATGGCT ACATACGTTA TAAGCTAGCA AGAGGCGCTA CTAAATATGA 
    AAATGGAAAG CACTATAGGG ATCTGTCAAA GCTGAACAGA GATCCGAAGA 
    AGATTCTGTT TGTTAGCGCA AATGCCTTTG AATCAACCCT TCAGCCAGAA 
    AATAGCGTGC CAATCAAGCC TTACAAACTA GAAGCTGATG ACACAGCCCT 
    AGTTGACCTG ATACCCTTCC TTGAATATGT TGCACGTAAC AGTCCAGCAG 
    ACATCAGACC GGTTCTGGCC TCTTTTGAGA GAAAAGATAT TGCCAAAGAG 
    TTCATTGACA GGTCCATAGA GTATCAAAAG CGAAAGCAAG GACAACTGGG 
    ACAAGGTCGA TTCTGGAGGC GTTAAAGGAT CTAAGATTTA TGTATAGAGC 
    GAGAGACAAT TATATCATCA TTGATGGTGC ACACCATAAA ATAGGAACAT 
    GAGCTACCGT TCTTCGCTAT GGATTTATTA GGTAAAATCC GAATTAAAAT 
    ACTGTCTTTG TCATCAAAGA GTTTTTATGT TACCCAATTT TCCTCGTCTT 
    TCTCTCTGCT TTACATAGAA AATTTCTATG AGAACGAAAA AGAAATTATC 
    ATATGGAAGG TTCATTTTTC GTTGACTAAT AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT1G55900.1 [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 7.1e-44
    HMMPanther TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 5 7.8e-99
    HMMPanther NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-REL 7.8e-99
    HMMPfam NLI interacting factor 1.9e-36
    ProfileScan NLI interacting factor 36.986
    superfamily HAD-like 7.7e-46
    HMMSmart NLI interacting factor 3.6e-50

    See the detailed result >

    AT1G55900.1

    Model type
    Protein coding
    Short Description
    Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
    Curator Summary
    component of a translocase in the mitochondrial inner membrane
    Computational Description
    TIM50; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G29780.1); Has 2137 Blast hits to 2133 proteins in 243 species: Archae - 0; Bacteria - 8; Metazoa - 726; Fungi - 412; Plants - 369; Viruses - 0; Other Eukaryotes - 622 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR