F07201

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07201

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F07201

Determination of introduced cDNA(s)

  • RAFL04-14-D08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-14-D08 - Resource: pda00484

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-14-D08 - full reading 
    AAGGAAAAGG CAATGCAAGA AGAAGCTTAA ATCTCTCTTC TCTGCTCCTG 
    AAGTCTGTTC ATGGCGATGT CGGGAACTTT CCATTTGACT TCTGACTATG 
    TCCCTGGTTA CACACTTTCA GACAGCCGTT GCTTCTTTAA CTCTGCTGTT 
    TCAAGAAGAA CACTTGCCAT ATTACCTTGC TCTTCCTGTC TCGATCACAA 
    GAATGGGCGT CTGAAATCTG TCCCCAATAG AAGTTCTTTT GTGTGCCGAG 
    CAAGTTCTGG CGGCTATAGG AGAAATCCTG ATTTCTCAAG ACTTAATAAG 
    CATGGTTACC GGGGAAACAA CAGGCAAAGC GGAGGGAGAG AAGATTTTGA 
    TATCGAAAAC TCTGATATGT TGTCTTCAAG AAATGGGCCT TTATTCAACC 
    TGTCTAGTTC CCCCAAATTC CAAGCTACCT CATCCCCTGG ACCTAGAGAG 
    AAAGAGATCG TGGAGCTTTT CAGAAAGGTT CAAGCTCAGC TCCGAGCTCG 
    TGCTGCAGCA AAGAAAGAAG AAAAAAAGAT TGAAGAAGCT TCTAAAGGGC 
    AGGGAAAAGA AAGTGAAACT GTTGACTCTC TTCTTAAGTT ACTAAGGAAG 
    CACTCGGGAG AGCAAAGCAA GAGGCAAGTT AGCAAATTTA GCAGCCAGGG 
    AGAAGTACAA GGAGATACTG TTGACAAACA AGATCGCACC GGAAATCTTG 
    TCACTTCAGG GAACAAAGAT AATAATGCAT CATCCTTTAC CAGACCAACA 
    TCAAGCTTCA GAAGAAAGTC GCCAGTACCA AGATCTCAAT CACCGCCAGC 
    TTATTCTAGC GAGGCAACTT TTGATCAATC ATCAAGTTAC AGTGTAACCT 
    GGACCCAGAA GAAGGATACA GTAGAGTTGC ATGATGAGCC TGAACATGAG 
    CCTGCGTATG AGCATGAGCA TGAGCCTGAA AATGAGTCAG AACCTGGGCC 
    TGTGACAACT ATGCTTGAAC CAGATTCAGA GCTGAAACCA GAGTCATCAT 
    CATTTTATCA AGAGGAGGAG GATGATGATG TTACTTTTGA TGTGTTATCA 
    CAGGATGATG GTATTTTAGA TGTGTTATCA GATGATGATG AGTCTCTCGA 
    TGATGCTGAT GAAGATAGTG ATGAAGCTGA GGAAGAAGCC GTGAAAGACT 
    TGAGTGAATT GAAGCTGGTC GAACTTAGAG GCATAGCAAA GTCACGGGGA 
    CTAAAAGGGT TGTCAAAGAT GAAGAAAGCC GAATTAGTGG AGTTGCTTGG 
    TAGTGATTCC AGCTGAACCT TGCTCTAGTA TGCACCAGTT AAAATGAGTT 
    ACTTTCTCTG TATTTTGTTT GTTTGGAAAA TGCTGGCTTT GATGTTCTTG 
    ATTTACTAGG ATTACCTTCT TCTCTTTTAA GTTATTATTA TTACACTGAT 
    GTACCTTGTC AACTACAGTT TTCAGGACGC ATTATTTACT GTTCAATCAT 
    ATGGATTTTC AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT1G06190.1 [+] show detail - Rho termination factor
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PLASMA MEMBRANE PROTON-ATPASE 3.9e-77
    HMMPanther ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 3.9e-77
    Coil coiled-coil 0
    HMMPfam Rho termination factor, N-terminal 2.7e-07

    See the detailed result >

    AT1G06190.1

    Model type
    Protein coding
    Short Description
    Rho termination factor
    Computational Description
    Rho termination factor; FUNCTIONS IN: transcription termination factor activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding; INVOLVED IN: transcription termination, ATP biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rho termination factor, N-terminal (InterPro:IPR011112), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757); BEST Arabidopsis thaliana protein match is: ATP binding;ATPases, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT2G31150.1); Has 1888 Blast hits to 1636 proteins in 313 species: Archae - 6; Bacteria - 275; Metazoa - 547; Fungi - 247; Plants - 133; Viruses - 50; Other Eukaryotes - 630 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR