F07203

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07203

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Other)
  • abnormal (PATO:0000460)
    (Silique::Others)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07203

Determination of introduced cDNA(s)

  • RAFL05-09-D06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-09-D06 - Resource: pda02481

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-09-D06 - full reading 
    AAAGAGAATT CTCTCATTTC TTCTTCTTCG CTCAGCTCCG ACAACGAAGG 
    GCGAAGAATC TCGCTCCCTC AATTTCGCAT TGCCATCGAT TTTCTTAGAG 
    GTTAAAATGG TTGAACAGAC TCAGCACCCC ACGATTCTTC AGAAGGTTTC 
    TGGCCAACTC TTGAGCTCGA GTGTTTCTCA GGACATTCGT GGTTATGCTT 
    CGGCTTCCAA AAGGCCTGCT ACATACCAGA AACATGCAGC TTACGGAAAC 
    TACTCCAATG CTGCATTTCA ATATCCTCTT GTGGCTGCAT CTCAGATTGC 
    AACTACTACT TCTCCTGTGT TTGTCCAAGC TCCAGGAGAG AAGGGATTTA 
    CTAACTTTGC TATTGATTTC ATGATGGGTG GTGTTTCTGC TGCTGTGTCA 
    AAGACTGCTG CTGCTCCCAT TGAGCGTGTC AAGCTTTTGA TTCAAAACCA 
    GGATGAGATG CTTAAGGCTG GAAGGCTTAC TGAGCCATAC AAGGGTATTC 
    GTGACTGTTT CGGCAGGACA ATTAGGGATG AAGGTATTGG TTCGTTGTGG 
    AGAGGAAACA CCGCTAATGT TATCCGTTAC TTCCCCACTC AGGCCTTGAA 
    CTTTGCATTC AAAGATTACT TCAAGAGGCT TTTCAACTTC AAGAAAGACA 
    AGGATGGCTA CTGGAAGTGG TTTGCTGGTA ACTTGGCATC TGGAGGTGCT 
    GCTGGTGCCT CTTCCCTTCT CTTTGTGTAC TCTCTTGACT ATGCACGTAC 
    CCGTCTTGCC AATGACTCCA AGTCTGCCAA GAAGGGAGGA GGTGAAAGGC 
    AGTTCAATGG TCTTGTTGAT GTCTACAAGA AGACCCTCAA GTCAGATGGT 
    ATTGCTGGAC TTTACCGTGG TTTCAACATC TCGTGTGCTG GTATCATTGT 
    CTACCGTGGT CTCTACTTTG GACTGTACGA CTCTGTGAAG CCTGTCCTCC 
    TCACTGGAGA CCTGCAGGAC AGTTTCTTCG CTAGTTTTGC TCTTGGATGG 
    CTCATCACCA ATGGTGCGGG TCTTGCGTCG TACCCGATTG ACACGGTTAG 
    AAGAAGAATG ATGATGACAT CAGGTGAAGC GGTGAAGTAC AAGAGCTCAT 
    TTGATGCGTT CTCACAGATC GTGAAGAAGG AAGGAGCCAA GTCTCTGTTC 
    AAGGGTGCGG GTGCCAACAT CCTGCGTGCC GTTGCAGGTG CTGGTGTGCT 
    TGCTGGCTAC GACAAGCTGC AGTTAATCGT CTTCGGCAAG AAGTATGGAT 
    CTGGAGGTGC CTAAGTACCA CCAAATCCCG CAGTCATTAA GCTTCGGCTT 
    TTGTTTTTTT CTCCATTTTT TTTGCAGTTT CAGATTTCTT TTATAAAAAA 
    GATGTTGATG AAATCATTTC CCCATAAAAT TAGAGAGGAG CAAGGGGAAA 
    TATTATCTGT TCGACGATAA GGTTTTTGTT ATATGGAATA AATTTTGTAA 
    AAAAAAAAAA AAAGAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT5G13490.1 [+] show detail - ADP/ATP carrier 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Mitochondrial substrate carrier 4.9e-81
    FPrintScan Mitochondrial carrier protein 1.1e-67
    FPrintScan Mitochondrial carrier protein 1.1e-67
    FPrintScan Mitochondrial carrier protein 1.1e-67
    FPrintScan Mitochondrial carrier protein 1.1e-67
    FPrintScan Mitochondrial carrier protein 1.1e-67
    FPrintScan Mitochondrial carrier protein 1.1e-67
    FPrintScan Adenine nucleotide translocator 1 1.1e-65
    FPrintScan Adenine nucleotide translocator 1 1.1e-65
    FPrintScan Adenine nucleotide translocator 1 1.1e-65
    FPrintScan Adenine nucleotide translocator 1 1.1e-65
    FPrintScan Adenine nucleotide translocator 1 1.1e-65
    FPrintScan Adenine nucleotide translocator 1 1.1e-65
    FPrintScan Adenine nucleotide translocator 1 1.1e-65
    ProfileScan Mitochondrial substrate/solute carrier 24.68
    ProfileScan Mitochondrial substrate/solute carrier 22.041
    ProfileScan Mitochondrial substrate/solute carrier 19.188
    HMMPanther ADP,ATP CARRIER PROTEIN 4.5e-186
    HMMPanther Mitochondrial substrate carrier 4.5e-186
    HMMPfam Mitochondrial substrate/solute carrier 2.4e-24
    HMMPfam Mitochondrial substrate/solute carrier 4.2e-21
    HMMPfam Mitochondrial substrate/solute carrier 2.4e-16

    See the detailed result >

    AT5G13490.1

    Model type
    Protein coding
    Short Description
    ADP/ATP carrier 2
    Curator Summary
    Encodes mitochondrial ADP/ATP carrier
    Computational Description
    ADP/ATP carrier 2 (AAC2); FUNCTIONS IN: protein binding, binding, copper ion binding, ATP:ADP antiporter activity; INVOLVED IN: transport, purine nucleotide transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 1 (TAIR:AT3G08580.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR