F07218

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07218

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07218

Determination of introduced cDNA(s)

  • RAFL08-10-P05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-10-P05 - Resource: pda04627

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-10-P05 - full reading
    AACGATATAA ACACATATGT ATATGGTTTT CGACCTCTCT TCTCCAAAAC 
    CATCACAGAG AGAGTCGCCG AAATAAATTG AAATCCGGTG AGAAGATTTT
    GGATTCACTC CTTCCTTCTT TCTTCTTCTT TATCATCATT TGAGCTGGTT
    TTGGTATCTC TCCTGACGAA TTTGAATCTC TCAGCCATTT TCTCTTCTCG
    CATCTGTGTT TTCGTGCTTG GAGCTGTACA CGTTTCTTTA ATTTGAATAG
    TGATTTTGCG TTCGTTAATT AGCCTTCTCG TACGAGTGGG CTATTTTGGG
    AATGATTTAG GTGGTTTTAA GTTACTGGGT AGTAGTCACT GCTGAGCGAT
    TTCTGTTTCT CCTGTTGAAT GATTGATTCA GAAATTTGAA ATTCACATCG
    AAACCAAATC TTAAATCATA TTGGTAGCTT TTTTTTTGTT TTGTGATTAG
    ATACTGTTTT TTTATAGTAT TAAATTCGTT TTGGTGTGAG TGATTTAGTG
    TTTGGGAAAT TATTTAATTT AGTGGTTATT TTCTGATTTA GTGATGATTT
    GAGAATTTTG TGTTGTTTAT ATTCTTGGTA GCGGGAAATT TGTACTTTCC
    TTTGTGGACC TTTCAACTAT TGAATGTGGA AGATTTGCTG AGAATCTTAG
    AAAGTCATCA TCATCCATAC GTAAGAGAAC TTTTTTTTAG CTTGAGAGTG
    ATTTTCAGAT GGAGAATGGG TTATGGGAGG TTTTAGGTTC AAAAGGGTTG
    TTGAAGAAAC ATGAATTCAT TAGGATTTTG GTTCAATGCT TATACTCGTT
    AGGATTCAAG AACTCTGCTT CTTGTCTGGA ATTCGAGTCA AAGATCTTGT
    ATAAAACAGC TGATTCTGAG TTTCTTGAAA AGCAAGTTTT GAGTGGGAAC
    TGGGATAGTT GCGTACAGGT TCTAGACAGA ATTTTTGATA ATTCCATGGA
    TGATACGAGG AACACGGCTT TATATCTAGT GTTCAAGCAA TGTTTGTTGG
    AGTATTTGAA ACGTGGGGAT GTTTCTTTGG CCTTGAATGT GTTACGGAAG
    CAAGCTCCGT TGTTACGGAT GGGAAAAGAG AAGATTCATA GGCTTGCTTG
    TGATATTGTT TATTCGAAAG AGATGGAATC CGGTGAAGTA GACAACTGTT
    TAGTTCTAGA TTTGAGGAGA AAGTTGTTGG TTGAACTGGA GAAGTTGATT
    CCCTTGCCAA TTGTTATTCC TGAGAGAAGG TTGGAACATT TGGTTGAGAC
    TGCTGTGATG GACCAGATTG ATACGTGTAT GTATCATAAC TCATGTGATG
    CAGTATCGCT TTACAAGGAT CACTGTTGCG GTAGAGACCA AATTCCTTCA
    GAGACAGTCC AGATTTTGGT GGCACACAAA AATGAAGTGT GGTTTGTGCA
    ATTCTCTAAT AGTGGCAAAT ATCTGGCCAC TGCATCAAGC GATTGTACAG
    CTATAATATG GAAGGTACTG GATGACAACA AAGTCGAACT GAAGCACACA
    CTTGAGAGCC ACCAAAATCC AGTTTCTTTT GTCTCGTGGA GTCCTGACGA
    TACTAAACTG CTTACATGCG GAAACGCTGA GGTTCTTAAG CTATGGGATG
    TTGACACAGT TCTGACCCAG AAAGAGGGAT TGTAATGTGG GACACTGATG
    GAAACGAGAT CAAAGCCTGG AGAGGAACGA GAATTCCAAA GGTGGTGGAT
    TTGGCTGTGA CGCCGGATGG CGAGAGTATG ATTACAGTGT TTTCGGATAA
    AGAGATCCGG ATCTTGAATT TGGAGACAAA AGTCGAACGT GTTATCTCTG
    AGGAACAGCC AATTACTTCC CTTTCAATTT CTGGTGATGG TAAGTTTTTT
    ATAGTCAACT TGAGCTGCCA AGAGATACAT CTTTGGGATC TTGCTGGAGA
    GTGGAAACAA CCATTGAAGT TCTCGGGTCA CAGGCAGAGC AAATACGTGA
    TACGGTCATG TTTTGGTGGG TTGGATAGTT CGTTCATCGC CAGTGGAAGT
    GAGGATTCAC AGGTTTACAT ATGGAATCTA AAGAACACAA AGCCGCTTGA
    AGTGTTATCA GGTCATTCGA TGACCGTAAA CTGTGTAAGC TGGAACCCGA
    AAAATCCTCG GATGCTAGCC TCTGCTAGTG ATGACCAAAC CATCCGTATT
    TGGGGACCGG GCAAACCGAA CAAACCACTG AACTGATTAG ATAACCAGAA
    ACCGTAGTAG CTTTAAACCA GGACCTAGTT CTAGTAGTTC CACATTTGTG
    TATAGTTCAT TTCTGGTTTT TTCTTTTTTG GTGGTCCTTA TTGGCTTTGC
    AGAACAATCT CTTGCTTTTT GAGTTTTGGT ACACTGGTTT TGGAGAACTT
    GATTTGAGAT GAGCCATGAA TTGAAACCAA ACCGGTTTAG GCGGTAAACT
    GAACCAAGCT GTGTTGAGGA GTTAGGTGGC AATTGTTTGG TGTTCAGAGC
    AAAACTTAGC TAACTACTTG TTTCGTTGGT CATTTGCTAC CATGTGGGTT
    CCCCGTTATT TTAAACAGAA AATTTAATTA TAATATAAAC TTCGGAAACG
    CCCTTAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT5G43920.1 [+] show detail - transducin family protein / WD-40 repeat family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily WD40 repeat-like-containing domain 2.1e-21
    superfamily WD40 repeat-like-containing domain 1.1e-34
    HMMPanther WD REPEAT PROTEIN 26-RELATED 2.3e-71
    HMMPanther WD REPEAT PROTEIN 26-RELATED 1.5e-91
    ProfileScan WD40 repeat 2 11.845
    ProfileScan WD40 repeat 2 12.547
    ProfileScan WD40-repeat-containing domain 18.985
    ProfileScan LisH dimerisation motif 8.631
    ProfileScan CTLH, C-terminal LisH motif 11.444
    ProfileScan WD40 repeat 2 10.074
    ProfileScan WD40 repeat 2 14.251
    ProfileScan WD40-repeat-containing domain 20.804
    HMMSmart CTLH, C-terminal LisH motif 7.8e-09
    HMMSmart WD40 repeat 6.6e-08
    HMMSmart WD40 repeat 3e-07
    HMMSmart WD40 repeat 16
    HMMSmart WD40 repeat 1.2
    HMMSmart WD40 repeat 0.048
    HMMSmart WD40 repeat 1.3e-10
    Gene3D WD40/YVTN repeat-like-containing domain 3.1e-20
    Gene3D WD40/YVTN repeat-like-containing domain 5.7e-31
    HMMPfam WD40 repeat, subgroup 8.3e-09
    HMMPfam WD40 repeat, subgroup 3.2e-06
    HMMPfam WD40 repeat, subgroup 0.0013
    HMMPfam WD40 repeat, subgroup 2e-12
    PatternScan WD40 repeat, conserved site 0

    See the detailed result >

    AT5G43920.1

    Model type
    Protein coding
    Short Description
    transducin family protein / WD-40 repeat family protein
    Computational Description
    transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G08560.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR