F07218

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07218

Determination of introduced cDNA(s)

RAFL08-10-P05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-10-P05 - Resource: pda04627

full reading [+] show sequence

AACGATATAA ACACATATGT ATATGGTTTT CGACCTCTCT TCTCCAAAAC 
CATCACAGAG AGAGTCGCCG AAATAAATTG AAATCCGGTG AGAAGATTTT 
GGATTCACTC CTTCCTTCTT TCTTCTTCTT TATCATCATT TGAGCTGGTT 
TTGGTATCTC TCCTGACGAA TTTGAATCTC TCAGCCATTT TCTCTTCTCG 
CATCTGTGTT TTCGTGCTTG GAGCTGTACA CGTTTCTTTA ATTTGAATAG 
TGATTTTGCG TTCGTTAATT AGCCTTCTCG TACGAGTGGG CTATTTTGGG 
AATGATTTAG GTGGTTTTAA GTTACTGGGT AGTAGTCACT GCTGAGCGAT 
TTCTGTTTCT CCTGTTGAAT GATTGATTCA GAAATTTGAA ATTCACATCG 
AAACCAAATC TTAAATCATA TTGGTAGCTT TTTTTTTGTT TTGTGATTAG 
ATACTGTTTT TTTATAGTAT TAAATTCGTT TTGGTGTGAG TGATTTAGTG 
TTTGGGAAAT TATTTAATTT AGTGGTTATT TTCTGATTTA GTGATGATTT 
GAGAATTTTG TGTTGTTTAT ATTCTTGGTA GCGGGAAATT TGTACTTTCC 
TTTGTGGACC TTTCAACTAT TGAATGTGGA AGATTTGCTG AGAATCTTAG 
AAAGTCATCA TCATCCATAC GTAAGAGAAC TTTTTTTTAG CTTGAGAGTG 
ATTTTCAGAT GGAGAATGGG TTATGGGAGG TTTTAGGTTC AAAAGGGTTG 
TTGAAGAAAC ATGAATTCAT TAGGATTTTG GTTCAATGCT TATACTCGTT 
AGGATTCAAG AACTCTGCTT CTTGTCTGGA ATTCGAGTCA AAGATCTTGT 
ATAAAACAGC TGATTCTGAG TTTCTTGAAA AGCAAGTTTT GAGTGGGAAC 
TGGGATAGTT GCGTACAGGT TCTAGACAGA ATTTTTGATA ATTCCATGGA 
TGATACGAGG AACACGGCTT TATATCTAGT GTTCAAGCAA TGTTTGTTGG 
AGTATTTGAA ACGTGGGGAT GTTTCTTTGG CCTTGAATGT GTTACGGAAG 
CAAGCTCCGT TGTTACGGAT GGGAAAAGAG AAGATTCATA GGCTTGCTTG 
TGATATTGTT TATTCGAAAG AGATGGAATC CGGTGAAGTA GACAACTGTT 
TAGTTCTAGA TTTGAGGAGA AAGTTGTTGG TTGAACTGGA GAAGTTGATT 
CCCTTGCCAA TTGTTATTCC TGAGAGAAGG TTGGAACATT TGGTTGAGAC 
TGCTGTGATG GACCAGATTG ATACGTGTAT GTATCATAAC TCATGTGATG 
CAGTATCGCT TTACAAGGAT CACTGTTGCG GTAGAGACCA AATTCCTTCA 
GAGACAGTCC AGATTTTGGT GGCACACAAA AATGAAGTGT GGTTTGTGCA 
ATTCTCTAAT AGTGGCAAAT ATCTGGCCAC TGCATCAAGC GATTGTACAG 
CTATAATATG GAAGGTACTG GATGACAACA AAGTCGAACT GAAGCACACA 
CTTGAGAGCC ACCAAAATCC AGTTTCTTTT GTCTCGTGGA GTCCTGACGA 
TACTAAACTG CTTACATGCG GAAACGCTGA GGTTCTTAAG CTATGGGATG 
TTGACACAGT TCTGACCCAG AAAGAGGGAT TGTAATGTGG GACACTGATG 
GAAACGAGAT CAAAGCCTGG AGAGGAACGA GAATTCCAAA GGTGGTGGAT 
TTGGCTGTGA CGCCGGATGG CGAGAGTATG ATTACAGTGT TTTCGGATAA 
AGAGATCCGG ATCTTGAATT TGGAGACAAA AGTCGAACGT GTTATCTCTG 
AGGAACAGCC AATTACTTCC CTTTCAATTT CTGGTGATGG TAAGTTTTTT 
ATAGTCAACT TGAGCTGCCA AGAGATACAT CTTTGGGATC TTGCTGGAGA 
GTGGAAACAA CCATTGAAGT TCTCGGGTCA CAGGCAGAGC AAATACGTGA 
TACGGTCATG TTTTGGTGGG TTGGATAGTT CGTTCATCGC CAGTGGAAGT 
GAGGATTCAC AGGTTTACAT ATGGAATCTA AAGAACACAA AGCCGCTTGA 
AGTGTTATCA GGTCATTCGA TGACCGTAAA CTGTGTAAGC TGGAACCCGA 
AAAATCCTCG GATGCTAGCC TCTGCTAGTG ATGACCAAAC CATCCGTATT 
TGGGGACCGG GCAAACCGAA CAAACCACTG AACTGATTAG ATAACCAGAA 
ACCGTAGTAG CTTTAAACCA GGACCTAGTT CTAGTAGTTC CACATTTGTG 
TATAGTTCAT TTCTGGTTTT TTCTTTTTTG GTGGTCCTTA TTGGCTTTGC 
AGAACAATCT CTTGCTTTTT GAGTTTTGGT ACACTGGTTT TGGAGAACTT 
GATTTGAGAT GAGCCATGAA TTGAAACCAA ACCGGTTTAG GCGGTAAACT 
GAACCAAGCT GTGTTGAGGA GTTAGGTGGC AATTGTTTGG TGTTCAGAGC 
AAAACTTAGC TAACTACTTG TTTCGTTGGT CATTTGCTAC CATGTGGGTT 
CCCCGTTATT TTAAACAGAA AATTTAATTA TAATATAAAC TTCGGAAACG 
CCCTTAAAAA AAAAAAAAAA A

Gene models with high sequence identity

AT5G43920.1 [+] show detail - transducin family protein / WD-40 repeat family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	WD40 repeat-like-containing domain	2.1e-21
superfamily	WD40 repeat-like-containing domain	1.1e-34
HMMPanther	WD REPEAT PROTEIN 26-RELATED	2.3e-71
HMMPanther	WD REPEAT PROTEIN 26-RELATED	1.5e-91
ProfileScan	WD40 repeat 2	11.845
ProfileScan	WD40 repeat 2	12.547
ProfileScan	WD40-repeat-containing domain	18.985
ProfileScan	LisH dimerisation motif	8.631
ProfileScan	CTLH, C-terminal LisH motif	11.444
ProfileScan	WD40 repeat 2	10.074
ProfileScan	WD40 repeat 2	14.251
ProfileScan	WD40-repeat-containing domain	20.804
HMMSmart	CTLH, C-terminal LisH motif	7.8e-09
HMMSmart	WD40 repeat	6.6e-08
HMMSmart	WD40 repeat	3e-07
HMMSmart	WD40 repeat	16
HMMSmart	WD40 repeat	1.2
HMMSmart	WD40 repeat	0.048
HMMSmart	WD40 repeat	1.3e-10
Gene3D	WD40/YVTN repeat-like-containing domain	3.1e-20
Gene3D	WD40/YVTN repeat-like-containing domain	5.7e-31
HMMPfam	WD40 repeat, subgroup	8.3e-09
HMMPfam	WD40 repeat, subgroup	3.2e-06
HMMPfam	WD40 repeat, subgroup	0.0013
HMMPfam	WD40 repeat, subgroup	2e-12
PatternScan	WD40 repeat, conserved site	0

See the detailed result >

AT5G43920.1

Model type: Protein coding
Short Description: transducin family protein / WD-40 repeat family protein
Computational Description: transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G08560.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR