F07219

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07219

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07219

Determination of introduced cDNA(s)

  • RAFL09-91-J23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-91-J23 - Resource: pda09018

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-91-J23 - full reading 
    ACAAGCTTCT TCGTCTCCTT CACAGAGCTT TATTCTTGCC CTAGAGATAC 
    CGAGCGGGAG ATTCCAGATT GAGAGCAGCT TCGAGTCTCT CTCTCCTCGC 
    CGTTCCTTTT CGCTTCTTCA AGTTTCGTTG CCAGAGAGAT TCTAGGTATT 
    GAAGTTATAG AATGGACTTT GATGAGTATG AGTACTTAGA GAAGACAGTT 
    GAAAATCCTC ACCTGGAGAA TGAAGTTGGT AATGGTGGTG GTGATGAGAA 
    AGTCAAATCT GAAGGGAAAG AGAGGAGTAG GAGCTCAAGG CATAGGGGTG 
    ACAAGAAGAA GGAGAGGGAT GAAGATGAGG ATGGTCGGCG TTCTAAGCGG 
    TCGAGATCGC ATCACCGTTC ACGTTCTAGG GACAGAGAGA GGGATAGGCA 
    TAGAAGTAGC AGGGAGCACA GAGATAGAGA TCGTGAAAAG GATGTAGATA 
    AAGAAGAAAG AAATGAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT2G16940.2 [+] show detail - Splicing factor, CC1-like
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G16940.2

    Model type
    Protein coding
    Short Description
    Splicing factor, CC1-like
    Computational Description
    Splicing factor, CC1-like; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Splicing factor, CC1-like (InterPro:IPR006509), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: Splicing factor, CC1-like (TAIR:AT5G09880.1).
    Link
    InterPro Scan - TAIR