F07227

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07227

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • variegated (PATO:0000335)
    (Rosette leaf::Color::variegated)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07227

Determination of introduced cDNA(s)

  • RAFL05-12-M22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-12-M22 - Resource: pda09325

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-12-M22 - full reading 
    GTTTTCCCCC AAATTCTCAT AATTTTCACA AACAACCTCT CGTCTTCTAG 
    GTTAATCCAA TTTCGTCGAT TCATGAAGTT CACAATTCTC CCATCGGAAA 
    ATTCTTCGTA ATCGACGACG AAGAGATCAT GAGTACCGTC GGAGGTATAG 
    AGCAGTTGAT ACCTGATTCC GTTTCAACGT CGTTCATCGA AACGGTGAAC 
    GGTTCGCACC AGTTCACGAT TCAAGGTTAC TCTCTAGCCA AAGGCATGAG 
    CCCTGGGAAG TTTATACAGA GCGATATCTT CTCCGTTGGT GGATACGATT 
    GGGCGATTTA CTTCTATCCT GATGGGAAGA ACCCGGAGGA CCAGTCCTCG 
    TATATCTCTT TGTTCATCGC TTTAGCGAGT GATTCTAATG ATATTAGGGC 
    TTTGTTTGAG CTTACGCTTA TGGATCAGAG TGGGAAAGGG AAACATAAGG 
    TGCATAGTCA CTTTGATCGG GCGCTTGAAG GTGGTCCTTA TACACTTAAG 
    TATAAAGGAA GCATGTGGGG TTACAAACGC TTTTTCAAAC GATCAGCTTT 
    AGAAACCTCT GACTACTTAA AGGATGATTG TCTTGTCATC AATTGTACTG 
    TTGGCGTTGT TAGAGCCCGA CTCGAGGGTC CAAAACAGTA TGGCATTGTG 
    CTACCCCTGT CGAATATGGG TCAGGGATTG AAAGACTTGT TAGATTCTGA 
    AGTTGGTTGT GACATAGCTT TCCAAGTCGG AGATGAAACA TACAAAGCTC 
    ACAAACTGAT TCTCGCGGCA CGCTCCCCAG TTTTTAGAGC TCAGTTTTTT 
    GGACCAATTG GGAATAACAA TGTGGATAGA ATAGTGATAG ACGACATCGA 
    ACCTTCTATC TTCAAGGCTA TGCTTAGCTT CATTTACACC GATGTACTTC 
    CTAATGTGCA TGAAATTACC GGGTCAACTT CTGCCAGTTC GTTTACAAAC 
    ATGATACAAC ATCTCTTGGC AGCTGCTGAC CTCTATGACC TTGCAAGGTT 
    AAAGATATTA TGTGAAGTTT TGCTATGCGA AAAACTTGAT GTTGATAATG 
    TGGCAACAAC ACTTGCGTTG GCTGAACAGC ACCAATTCTT ACAGCTCAAA 
    GCGTTCTGCT TAGAATTTGT TGCATCTCCA GCAAACTTGG GAGCTGTAAT 
    GAAGTCCGAA GGGTTCAAGC ACTTGAAACA GAGCTGTCCC ACTTTGTTAT 
    CTGAGTTGCT GAACACTGTT GCAGCAGCAG ATAAGAGCTC GACGAGTGGA 
    CAATCAAACA AGAAAAGAAG TGCGAGCAGT GTATTAGGGT GTGACACTAC 
    AAATGTGAGG CAATTGAGGA GGAGAACACG AAAAGAAGTG CGAGCAGTGT 
    CTTAGGATCA TTACATACCG TATGCAAAAT TCTAGAATTA TGCATTGTGT 
    TTCAAGCAGA GTTTATGAAT TCCAAGTCAT CCCGTGAACT TTTTTACCAG 
    TGAGAATTAT AGAGGCCTGA ACTCTGAAC

    Gene models with high sequence identity

    1. AT2G39760.1 [+] show detail - BTB/POZ/MATH-domains containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart MATH 2.4e-14
    HMMSmart BTB/POZ-like 3e-26
    HMMPfam BTB/POZ 1.2e-31
    HMMPfam MATH 2.3e-08
    Gene3D TRAF-type 2.5e-09
    Gene3D BTB/POZ fold 1.1e-24
    ProfileScan BTB/POZ-like 18.017
    ProfileScan MATH 25.096
    superfamily TRAF-like 4e-39
    superfamily BTB/POZ fold 1.3e-28
    HMMPanther BTB-RELATED 1.6e-84
    HMMPanther Kelch related 1.6e-84

    See the detailed result >

    AT2G39760.1

    Model type
    Protein coding
    Short Description
    BTB/POZ/MATH-domains containing protein
    Computational Description
    BPM3; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 1 (TAIR:AT5G19000.1); Has 6744 Blast hits to 6554 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 4817; Fungi - 136; Plants - 1477; Viruses - 34; Other Eukaryotes - 280 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR