F07247

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07247

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07247

Determination of introduced cDNA(s)

  • RAFL09-18-M05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-18-M05 - Resource: pda05473

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-18-M05 - full reading 
    CTCTCTCTCC TTTTCATCTT CTTTAACGCT TCTCTTTTCC AGAACTTGCT 
    CTCTCTCTCT CTTTCTATCA TCTCCTCACC GCTTCCTAAA TCTCTATAGC 
    GGTCTTCCTT CCCTCCTTTG TTTCCGGGCT GTTCCTTAAT CACTATCTCT 
    TTCTCTTTCT TCTGCCATCG CCAAACCTTA TCTGGGTTTT GCTTCTTATT 
    TGAAGATTTA TATGGGCTGA ACTAGGAATT TCATGGGAGT TGTGGAGGAT 
    ACTGAACCTC CTTTGAAACG TGCTAAGAGG CTTGCTGACG AACCGAACGG 
    CTTCTCCGCG AACTCGTCTG TTAGAGGTAG TAGTGTGAAC AGCAACTCTT 
    TGGGAGACCT GATGGCAAGG CCTCTGCCCT CCCAAGGGGA TGACGAAACT 
    ATCGGCTCCA AAGGGGTCAT TAGAAAATCT GAATTCGTTA GGATTATCAC 
    TAGGGCTCTT TATTCTCTTG GATATGATAA AACCGGGGCT ATGTTGGAGG 
    AAGAATCCGG TATCTCTCTG CACAATTCCA CCATTAAGCT GTTTCTGCAG 
    CAGGTTAAGG ACGGCAAATG GGATCAAAGT GTTAAAACAT TGCACAGAAT 
    CGGTTTCCCT GATGAGAAGG CTGTCAAGGC TGCGTCTTTC TTGCTCCTAG 
    AGCAAAAGTT CTTGGAGTTT CTCAAAGTTG AAAAGATAGC TGATGCGCTA 
    CGCACCTTAA GGAATGAGAT GGCGCCTCTT CGTATTAATA CAAAGCGTGT 
    TCATGAGCTC GCTTCCTCCC TTATATCACC TTCAAGCTTT ATATCACATA 
    CCACTTCGAC TCCAGGTAAA GAAAGTGTGA ATTCAAGGTC TAAGGTTTTG 
    GAGGAACTGC AAACCTTGCT TCCTGCTTCT GTTATAATCC CAGAAAAGAG 
    GTTGGAGTGT TTAGTTGAGA ATTCACTTCA TATTCAGCGG GATTCTTGTG 
    TTTTCCATAA TACTTTGGAT AGTGATTTGT CTTTGTATTC TGATCATCAA 
    TGCGGGAAGC ACCAAATTCC TTCTCAGACT GCTCAGATCT TGGAGTCACA 
    TACCGATGAA GTTTGGTTCT TGCAATTTTC ACATAATGGC AAATATTTGG 
    CTTCATCTTC CAAGGATCAA ACCGCAATTA TATGGGAGAT CAGCGCAGAT 
    GGGCACATTT CATTGAAGCA TACACTTGTT GGCCACCACA AACCCGTGAT 
    TGCCATCTTA TGGAGTCCTG ATGATCGTCA AGTTCTTACA TGTGGAGCAG 
    AAGAGGTTAT CAGACGCTGG GATGTTGATT CAGGAGACTG TGTTCACATG 
    TATGAAAAAG GCGGTATCAG TCCCATTTCT TGCGGATGGT ATCCTGATGG 
    GCAGGGGATA ATCGCCGGGA TGACAGACCG AAGCATCTGC ATGTGGGATT 
    TAGATGGTAG AGAGAAGGAA TGCTGGAAAG GTCAGAGGAC TCAAAAGGTA 
    TCAGATATAG CAATGACGGA TGATGGAAAG TGGCTCGTAA GTGTATGCAA 
    AGATTCCGTG ATATCACTAT TTGATAGAGA AGCTACAGTT GAGAGATTAA 
    TAGAAGAGGA AGACATGATT ACCTCGTTCT CGCTTTCGAA TGACAACAAA 
    TATATCCTGG TAAACCTCCT CAACCAGGAA ATCCGTCTCT GGAATATTGA 
    AGGTGACCCC AAGATTGTGT CGAGATACAA AGGCCACAAG CGTTCACGAT 
    TCATCATCAG ATCATGCTTT GGTGGGTATA AACAAGCTTT CATCGCTAGC 
    GGAAGCGAGG ACTCTCAGGT ATATATATGG CACAGATCTA CAGGGAAGTT 
    AATAGTTGAG CTACCAGGCC ATGCAGGAGC AGTTAACTGC GTGAGCTGGA 
    GCCCGACGAA TCTACACATG TTGGCTTCAG CAAGCGATGA TGGAACAATA 
    AGGATATGGG GACTTGACCG GATTAACCAA CAAAACCAGA AGAAGAAGCT 
    AGTGCAAGGA AGTAGCAGTA ATGGTGTGAT TCACCGATGC AATGGGAATT 
    GATTATGATA AAAAAAAAAG GAATGACCTT CTTAAAACTA TTTAACAGTT 
    ATGTTGTTTC TTCTTTCTTC ATCAGCCTCT TTTTGTTTGC TTCCTTTGGT 
    ATGGAAAGCA AACGAAAGAA GGTAAAAGCT GTTTTTTTTT TTCAAATTCT 
    GAACCCATAA GTGGAAGGAA CAAAAAGGAA AAAGAAAATG CAATTTGCAA 
    CATAATTCTT CTATTGATGT TACATTGTAC AT

    Gene models with high sequence identity

    1. AT5G08560.1 [+] show detail - transducin family protein / WD-40 repeat family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther WD REPEAT PROTEIN 26-RELATED 7.3e-182
    Gene3D WD40/YVTN repeat-like-containing domain 3.9e-63
    HMMSmart LisH dimerisation motif 0.0026
    HMMSmart CTLH, C-terminal LisH motif 4.1e-10
    HMMSmart WD40 repeat 2e-07
    HMMSmart WD40 repeat 1.7e-05
    HMMSmart WD40 repeat 0.72
    HMMSmart WD40 repeat 0.36
    HMMSmart WD40 repeat 13
    HMMSmart WD40 repeat 0.63
    HMMSmart WD40 repeat 2.8e-11
    ProfileScan WD40 repeat 2 12.981
    ProfileScan WD40 repeat 2 13.082
    ProfileScan WD40 repeat 2 14.352
    ProfileScan WD40-repeat-containing domain 41.473
    ProfileScan LisH dimerisation motif 9.316
    ProfileScan CTLH, C-terminal LisH motif 11.991
    FPrintScan G-protein beta WD-40 repeat, region 2.1e-05
    FPrintScan G-protein beta WD-40 repeat, region 2.1e-05
    FPrintScan G-protein beta WD-40 repeat, region 2.1e-05
    HMMPfam WD40 repeat, subgroup 1.3e-07
    HMMPfam WD40 repeat, subgroup 4.3e-05
    HMMPfam WD40 repeat, subgroup 0.19
    HMMPfam WD40 repeat, subgroup 0.1
    HMMPfam WD40 repeat, subgroup 0.21
    HMMPfam WD40 repeat, subgroup 3.2e-12
    PatternScan WD40 repeat, conserved site 0
    PatternScan WD40 repeat, conserved site 0
    superfamily WD40 repeat-like-containing domain 4.4e-65

    See the detailed result >

    AT5G08560.1

    Model type
    Protein coding
    Short Description
    transducin family protein / WD-40 repeat family protein
    Computational Description
    transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G43920.1); Has 58921 Blast hits to 28907 proteins in 822 species: Archae - 84; Bacteria - 8409; Metazoa - 23216; Fungi - 12597; Plants - 7341; Viruses - 6; Other Eukaryotes - 7268 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR