F07410

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07410

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07410

Determination of introduced cDNA(s)

  • RAFL09-83-O07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-83-O07 - Resource: pda08906

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-83-O07 - full reading
    ATCGGAATAT CTCTCTTCCT CTGTTTCTTC GCCATTCTCT CAGCTTTTCT 
    CCTTCTTCTT CGTCTTTGTC AGAGTGAATG GAGCTGTGGA CAGAAGCTAG
    AGCCTTAAAG GCAAGTCTAA GAGGAGAATC TACTATATCT CTCAAACATC
    ACCAAGTGAT TGTGTCGGAA GATTTAAGCC AAACTTCTTC CTTGCCGGAA
    GATTTCTCCG TTGAGTGTTT CCTCGATTTC TCAGAAGGTC AAAAAGAAGA
    AGAAGAAGAA GTTGTCTCTG TTTCTTCTTC ACAAGAGCAA GAAGAACAAG
    AACATGATTG TGTCTTTAGT TCACAACCTT GCATCTTTGA TCAACTTCCT
    TCTTTGCCGG ATGAAGATGT GGAAGAGCTT GAATGGGTAT CTCGTGTTGT
    GGATGATTGT TCATCACCAG AAGTTTCACT TCTCTTAACA CAAACACATA
    AAACCAAACC AAGCTTCTCA AGAATTCCGG TTAAACCAAG AACCAAACGG
    TCTCGGAACA GTTTAACCGG TAGTCGTGTT TGGCCACTCG TTTCAACCAA
    TCATCAACAT GCAGCAACAG AGCAGTTGAG GAAGAAGAAA CAAGAAACTG
    TCCTTGTGTT TCAACGAAGA TGCAGCCATT GTGGCACAAA CAACACACCA
    CAGTGGAGAA CCGGTCCGGT CGGTCCAAAA ACCTTATGTA ATGCATGTGG
    AGTCCGGTTT AAGTCTGGTA GGCTCTGCCC GGAATACAGA CCGGCGGATA
    GTCCGACGTT CTCGAATGAG ATTCACTCAA ATCTTCATAG GAAGGTTCTG
    GAATTAAGAA AGAGTAAAGA GTTGGGTGAA GAAACAGGTG AAGCTAGTAC
    TAAATCAGAC CCAGTCAAAT TTGGCAGCAA GTGGTAGATA AGACTTAGGT
    AAAATCTACT TTTTGTAACA TTATCTGTAG TGTTGTAATT TAACAACTTG
    CTTCTTAACA TTTTGAAACT GTTTCAGGAA CTAGTCTTAA GTAAACAATG
    GTTTTCTAT

    Gene models with high sequence identity

    1. AT4G34680.1 [+] show detail - GATA transcription factor 3
      E-value: 0; Score: 99.80

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glucocorticoid receptor-like (DNA-binding dom 8.7e-19
    PatternScan Zinc finger, GATA-type 0
    HMMPanther TRANSCRIPTION FACTOR GATA-3 0.00065
    HMMPanther TRANSCRIPTION FACTOR GATA (GATA BINDING FACTO 0.00065
    Gene3D Zinc finger, NHR/GATA-type 0.00047
    HMMPIR Transcription factor, GATA, plant 9.6e-154
    ProfileScan Zinc finger, GATA-type 11.952
    HMMSmart Zinc finger, GATA-type 3.7e-14
    HMMPfam Zinc finger, GATA-type 1.2e-15

    See the detailed result >

    AT4G34680.1

    Model type
    Protein coding
    Short Description
    GATA transcription factor 3
    Curator Summary
    Encodes a member of the GATA factor family of zinc finger transcription factors.
    Computational Description
    GATA transcription factor 3 (GATA3); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 7 (TAIR:AT4G36240.1); Has 1460 Blast hits to 1422 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 551; Plants - 835; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR