F07419

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07419

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07419

Determination of introduced cDNA(s)

  • RAFL09-84-F21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-84-F21 - Resource: pda08920

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-84-F21 - full reading 
    AGAAAACCCT TCTTTCGCTG TTGTTGCCGG AGAAAATGGT GATGATGTTG 
    AAGAAGACAG TGAAGAAAGG TTTAATCGGC GGAATGAGCT TCGCTAAAGA 
    CGCCGGAAAA ATCAATTGGT TTCCCGGTCA TATGGCTGCA GCTACTCGCG 
    CCATTCGTAA CCGCCTCAAG CTCTCCGATC TCGTTATCGA AGTTCGCGAT 
    GCTCGTATTC CTCTGTCATC GGCGAACGAA GATCTACAAT CCCAAATGTC 
    AGCTAAGAGA CGTATCATTG CTCTGAATAA GAAAGATTTA GCAAACCCTA 
    ATGTTCTCAA TAAATGGACT CGTCATTTCG AATCCAGCAA GCAAGATTGT 
    ATTGCCATTA ATGCTCATAG CAGAAGCTCT GTCATGAAGC TGCTTGATCT 
    CGTGGAGTTG AAGCTCAAAG AAGTGATTGC TAGGGAGCCT ACTTTACTTG 
    TAATGGTGGT TGGTGTCCCC AATGTTGGAA AATCTGCGCT CATTAACTCG 
    ATCCATCAAA TTGCAGCAGC TCGTTTTCCG GTGCAGGAGA GATTAAAGAG 
    AGCTACGGTT GGTCCATTGC CTGGTGTAAC ACAAGATATT GCTGGTTTCA 
    AGATTGCTCA TCGACCTAGT ATATATGTTC TAGACTCCCC TGGTGTGTTG 
    GTTCCAAGTA TCCCTGATAT CGAAACCGGT TTGAAGCTTG CTCTTTCAGG 
    GTCCGTTAAA GATTCAGTAG TGGGTGAAGA GCGGATTGCA CAATACTTTC 
    TAGCTATTCT AAACATTCGA GGGACTCCTC TTCATTGGAA GTACTTAGTT 
    GAGGGAATAA ACGAAGGGCC TCATGCAGAC TGCATCGATA AGCCAAGCTA 
    TAACTTAAAG GATCTTCGAC ACCAGAGAAC CAAACAACCA GATTCATCTG 
    CTCTGCACTA TGTCGGGGAT ATGATTTCAG AAGTGCAACG ATCACTGTAT 
    ATAACACTCT CAGAATTTGA TGGGGACACG GAGGATGAGA ATGATTTAGA 
    ATGTTTGATA GAGCAACAGT TTGAAGTTCT ACAAAAGGCA TTGAAGATTC 
    CTCACAAAGC ATCCGAAGCA AGGTTAATGG TCTCCAAGAA ATTTCTTACT 
    TTGTTTAGGA CAGGTAGACT TGGTCCCTTT ATCCTTGACG ATGTCCCTGA 
    AACTGAAACT GACCACCCCA ATTCAAAACG GGTAGTTGTT TTGTAAAATC 
    TTAAAGCAAA TTGTACCACA TTATGCGTGC AGCTTAAGAT GATGATTCTA 
    TTTGTTT

    Gene models with high sequence identity

    1. AT2G41670.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 2.5e-32
    superfamily P-loop containing nucleoside triphosphate hyd 2.1e-13
    HMMPfam GTP-binding protein, HSR1-related 1.5e-06
    Gene3D no description 2.1e-38
    HMMPanther GTP-BINDING PROTEIN-RELATED 5.6e-79
    HMMPanther GTP-BINDING PROTEIN-RELATED 5.6e-79

    See the detailed result >

    AT2G41670.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G10650.1); Has 3980 Blast hits to 3980 proteins in 1445 species: Archae - 109; Bacteria - 2376; Metazoa - 398; Fungi - 429; Plants - 195; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR