F07440

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07440

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07440

Determination of introduced cDNA(s)

  • RAFL09-32-C09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-32-C09 - Resource: pda05898

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-32-C09 - full reading 
    ACATATCCGC CATTGTTTCC GGCAACGCAA ACTACCAAAA AAAATAATGG 
    AGGTCGAAAG AGTCCAAGAC ATTTCATCTT CTTCTCTACT AACAGAAGCA 
    ATCCCGTTGG AGTTCATCAG ATCAGAGAAA GAACAACCAG CGATCACAAC 
    ATTCCGAGGT CCAACGCCGG CGATTCCCGT CGTCGATCTA AGCGATCCCG 
    ACGAAGAAAG CGTGAGGCGC GCGGTGGTGA AAGCGAGTGA AGAATGGGGG 
    CTATTCCAAG TGGTTAACCA CGGGATTCCG ACGGAGCTGA TACGACGTTT 
    ACAAGACGTC GGAAGAAAAT TCTTCGAGCT TCCTTCGTCG GAGAAAGAAT 
    CCGTCGCTAA ACCGGAAGAT TCGAAAGACA TTGAAGGATA CGGAACAAAG 
    CTTCAGAAAG ATCCAGAAGG TAAAAAAGCT TGGGTCGATC ATCTCTTCCA 
    TCGAATCTGG CCACCGTCAT GCGTCAATTA CAGATTCTGG CCTAAGAATC 
    CACCTGAATA CAGGGAGGTG AATGAAGAGT ATGCAGTGCA TGTGAAGAAG 
    CTATCGGAGA CGTTATTAGG GATTCTCTCG GATGGATTAG GGTTAAAGCG 
    TGATGCGTTG AAAGAAGGTC TCGGCGGAGA GATGGCGGAG TATATGATGA 
    AGATTAACTA TTATCCGCCG TGTCCTCGGC CGGATTTAGC TTTAGGTGTA 
    CCGGCTCATA CAGATCTCAG TGGAATCACT CTTCTTGTTC CTAACGAAGT 
    TCCTGGACTT CAAGTTTTCA AAGATGATCA CTGGTTCGAT GCAGAGTATA 
    TTCCCTCCGC CGTCATTGTT CACATCGGCG ATCAGATTCT GAGGTTGAGT 
    AATGGGAGGT ATAAAAATGT GTTGCATAGG ACGACGGTGG ATAAAGAGAA 
    GACGAGGATG TCGTGGCCGG TTTTCTTGGA GCCTCCCCGT GAAAAGATTG 
    TTGGACCTTT ACCGGAACTA ACCGGAGATG ATAATCCTCC AAAGTTTAAA 
    CCGTTTGCTT TCAAGGATTA CAGTTACCGC AAGCTCAATA AACTTCCTCT 
    GGATTGAGAA AAATCAATAC GAGAAGAATA ATTTGTGGTT GTGGAATAGG 
    AAGTGGTTCG TTATTGAGTT GTTGTTTTCC CGCGGTTGTG TCTCTTGCTT 
    ATTGTTATTT TATGTTTAAA ATAAAGATTA AAACATCTAC CTACATTGTG 
    TGTGATGTTG ACATGTTTTT ATTGTGTTGC GATGCCTTTG CAAGTTATGT 
    CGGACCATTT TTAGGCATTG GAAAGAGTAG GTTTGTATTT TGTAAATTTT 
    TAACCTGTCA CGGAAAAAAA TCGGTGATC

    Gene models with high sequence identity

    1. AT5G08640.1 [+] show detail - flavonol synthase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 7.7e-101
    HMMPanther FLAVONOL SYNTHASE 6.6e-213
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 6.6e-213
    HMMPfam Oxoglutarate/iron-dependent oxygenase 1.9e-22
    superfamily Clavaminate synthase-like 1.5e-102

    See the detailed result >

    AT5G08640.1

    Model type
    Protein coding
    Short Description
    flavonol synthase 1
    Curator Summary
    Encodes a flavonol synthase that catalyzes formation of flavonols from dihydroflavonols.
    Computational Description
    flavonol synthase 1 (FLS1); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: flavonol synthase 3 (TAIR:AT5G63590.1); Has 8476 Blast hits to 8432 proteins in 992 species: Archae - 0; Bacteria - 1104; Metazoa - 92; Fungi - 925; Plants - 4948; Viruses - 0; Other Eukaryotes - 1407 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR