F07518

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07518

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07518

Determination of introduced cDNA(s)

  • RAFL05-01-M18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-01-M18 - Resource: pda00758

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-01-M18 - full reading
    AGCCTCTCTG TTTCATCTTC TTCTCTAAAC TCTCAACATG TCTTGCTCGG 
    CCACCGATCT CGCTGTCCTG TTGGGTCCTA ATGCCACGGC GGCGGCCAAC
    TACATCTGTG GCCAGTTAGG CGACGTCAAC AACAAATTTA TCGACACCGC
    TTTCGCTATA GACAACACTT ACCTTCTCTT CTCCGCCTAC CTTGTCTTCT
    CTATGCAGCT TGGCTTCGCT ATGCTCTGTG CCGGTTCCGT GAGAGCCAAG
    AATACTATGA ACATCATGCT TACCAACGTC CTTGACGCTG CAGCCGGTGG
    TCTCTTCTAT TATCTGTTTG GCTACGCCTT TGCCTTTGGA TCTCCGTCCA
    ATGGTTTCAT CGGTAAACAC TACTTTGGTC TCAAAGACAT CCCCACGGCC
    TCTGCTGACA CTCCAACTTT CTCTACCAAT GGGCCTTTGC AATCGCTGCG
    GCTGGAATCA CAAGTGGCTC GATCGCTGAA CGGACACAGT TCGTGGCTTA
    CCTAATCTAT TCCTCTTTCT TAACCGGGTT TGTTTACCCG GTCGTCTCTC
    ACTGGTTCTG GTCAGTTGAT GGATGGGCCA GCCCGTTCCG TACCGATGGA
    GATTTGCTTT TCAGCACCGG AGCGATAGAT TTCGCTGGGT CCGGTGTTGT
    TCATATGGTC GGAGGTATCG CTGGACTCTG GGGTGCGCTC ATCGAAGGTC
    CACGACTTGG CCGGTTCGAT AACGGAGGCC GTGCCATCGC TCTTCGTGGC
    CACTCGGCGT CACTTGTTGT CCTTGGAACA TTCCTCCTCT GGTTTGGATG
    GTACGGATTT AACCCCGGTT CCTTCAACAA GATCCTAGTC ACGTACGAGA
    CAGGCACATA CAACGGCCAG TGGAGCGCGG TCGGACGGAC AGCTGTCACA
    ACAACGTTAG CTGGCTGCAC CGCGGCGCTG ACAACCCTAT TTGGGAAACG
    TCTACTCTCG GGACATTGGA ACGTCACTGA TGTATGCAAC GGCCTCCTCG
    GAGGGGTTTG CAGCCATAAC TGGTGGCTGC TCTGTCGTTG AGCCATGGGC
    TGCGATCATC TGCGGGGTTC GGGGCGGCCC TAGTCCTCCT CGGATGCAAC
    AAGCTCGCTG AGAAGCTCAA ATACGACGAC CCTCTTGAGG CAGCACAACT
    ACACGGTGGT TGCGGTGCGT GGGGACTAAT ATTCACGGCT CTCTTCGCTC
    AAGAAAAGTA CTTGAACCAG ATTTACGGCA ACAAACCCGG AAGGCCACAC
    GGTTTGTTTA TGGGCGGTGG AGGAAAACTA CTTGGAGCTC AGCTGATTCA
    GATCATTGTG ATCACGGGTT GGGTAAGTGC GACCATGGGG ACACTTTTCT
    TCATCCTCAA GAAAATGAAA TTGTTGCGGA TATCGTCCGA GGATGAGATG
    GCCGGTATGG ATATGACCAG GCACGGTGGT TTTGCTTATA TGTACTTTGA
    TGATGATGAG TCTCACAAAG CCATTCAGCT TAGGAGAGTT GAGCCACGAT
    CTCCTTCTCC TTCTGGTGCT AATACTACAC CTACTCCGGT TTGATTTGGA
    TTTTTACTTT TATTCTCTAT TTTCTAGAGT ATTATTTTAA ATGATGTTTT
    GTGATACTTA AATATTGTTT TGGATATTTT TTTGCATTTC AGTAATGTTT
    TAGATGTACA GTTTCATGGG GTTGTGATGA TAATATCTAT GTGGTCATTT
    GTGTTC

    Gene models with high sequence identity

    1. AT4G13510.1 [+] show detail - ammonium transporter 1;1
      E-value: 0; Score: 99.77

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ammonium transporter 3.9e-64
    HMMPfam Ammonium transporter 1.6e-20
    HMMPfam Ammonium transporter 8.7e-07
    HMMPfam Ammonium transporter 2e-35
    superfamily Ammonium transporter 1.8e-46
    superfamily Ammonium transporter 4.6e-18
    superfamily Ammonium transporter 1.3e-18
    PatternScan Ammonium transporter, conserved site 0
    HMMPanther AMMONIUM TRANSPORTER 1 2.8e-130
    HMMPanther Ammonium transporter 2.8e-130
    HMMPanther AMMONIUM TRANSPORTER 1 3.9e-59
    HMMPanther Ammonium transporter 3.9e-59
    HMMPanther AMMONIUM TRANSPORTER 1 1e-07
    HMMPanther Ammonium transporter 1e-07
    HMMPanther AMMONIUM TRANSPORTER 1 2.8e-83
    HMMPanther Ammonium transporter 2.8e-83

    See the detailed result >

    AT4G13510.1

    Model type
    Protein coding
    Short Description
    ammonium transporter 1;1
    Curator Summary
    Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake.
    Computational Description
    ammonium transporter 1;1 (AMT1;1); FUNCTIONS IN: ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, transport, protein polymerization, response to karrikin; LOCATED IN: nucleus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;3 (TAIR:AT3G24300.1); Has 11619 Blast hits to 11599 proteins in 2072 species: Archae - 224; Bacteria - 4688; Metazoa - 462; Fungi - 431; Plants - 505; Viruses - 0; Other Eukaryotes - 5309 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR