F07518

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07518

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07518

Determination of introduced cDNA(s)

  • RAFL05-01-M18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-01-M18 - Resource: pda00758

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-01-M18 - full reading 
    AGCCTCTCTG TTTCATCTTC TTCTCTAAAC TCTCAACATG TCTTGCTCGG 
    CCACCGATCT CGCTGTCCTG TTGGGTCCTA ATGCCACGGC GGCGGCCAAC 
    TACATCTGTG GCCAGTTAGG CGACGTCAAC AACAAATTTA TCGACACCGC 
    TTTCGCTATA GACAACACTT ACCTTCTCTT CTCCGCCTAC CTTGTCTTCT 
    CTATGCAGCT TGGCTTCGCT ATGCTCTGTG CCGGTTCCGT GAGAGCCAAG 
    AATACTATGA ACATCATGCT TACCAACGTC CTTGACGCTG CAGCCGGTGG 
    TCTCTTCTAT TATCTGTTTG GCTACGCCTT TGCCTTTGGA TCTCCGTCCA 
    ATGGTTTCAT CGGTAAACAC TACTTTGGTC TCAAAGACAT CCCCACGGCC 
    TCTGCTGACA CTCCAACTTT CTCTACCAAT GGGCCTTTGC AATCGCTGCG 
    GCTGGAATCA CAAGTGGCTC GATCGCTGAA CGGACACAGT TCGTGGCTTA 
    CCTAATCTAT TCCTCTTTCT TAACCGGGTT TGTTTACCCG GTCGTCTCTC 
    ACTGGTTCTG GTCAGTTGAT GGATGGGCCA GCCCGTTCCG TACCGATGGA 
    GATTTGCTTT TCAGCACCGG AGCGATAGAT TTCGCTGGGT CCGGTGTTGT 
    TCATATGGTC GGAGGTATCG CTGGACTCTG GGGTGCGCTC ATCGAAGGTC 
    CACGACTTGG CCGGTTCGAT AACGGAGGCC GTGCCATCGC TCTTCGTGGC 
    CACTCGGCGT CACTTGTTGT CCTTGGAACA TTCCTCCTCT GGTTTGGATG 
    GTACGGATTT AACCCCGGTT CCTTCAACAA GATCCTAGTC ACGTACGAGA 
    CAGGCACATA CAACGGCCAG TGGAGCGCGG TCGGACGGAC AGCTGTCACA 
    ACAACGTTAG CTGGCTGCAC CGCGGCGCTG ACAACCCTAT TTGGGAAACG 
    TCTACTCTCG GGACATTGGA ACGTCACTGA TGTATGCAAC GGCCTCCTCG 
    GAGGGGTTTG CAGCCATAAC TGGTGGCTGC TCTGTCGTTG AGCCATGGGC 
    TGCGATCATC TGCGGGGTTC GGGGCGGCCC TAGTCCTCCT CGGATGCAAC 
    AAGCTCGCTG AGAAGCTCAA ATACGACGAC CCTCTTGAGG CAGCACAACT 
    ACACGGTGGT TGCGGTGCGT GGGGACTAAT ATTCACGGCT CTCTTCGCTC 
    AAGAAAAGTA CTTGAACCAG ATTTACGGCA ACAAACCCGG AAGGCCACAC 
    GGTTTGTTTA TGGGCGGTGG AGGAAAACTA CTTGGAGCTC AGCTGATTCA 
    GATCATTGTG ATCACGGGTT GGGTAAGTGC GACCATGGGG ACACTTTTCT 
    TCATCCTCAA GAAAATGAAA TTGTTGCGGA TATCGTCCGA GGATGAGATG 
    GCCGGTATGG ATATGACCAG GCACGGTGGT TTTGCTTATA TGTACTTTGA 
    TGATGATGAG TCTCACAAAG CCATTCAGCT TAGGAGAGTT GAGCCACGAT 
    CTCCTTCTCC TTCTGGTGCT AATACTACAC CTACTCCGGT TTGATTTGGA 
    TTTTTACTTT TATTCTCTAT TTTCTAGAGT ATTATTTTAA ATGATGTTTT 
    GTGATACTTA AATATTGTTT TGGATATTTT TTTGCATTTC AGTAATGTTT 
    TAGATGTACA GTTTCATGGG GTTGTGATGA TAATATCTAT GTGGTCATTT 
    GTGTTC

    Gene models with high sequence identity

    1. AT4G13510.1 [+] show detail - ammonium transporter 1;1
      E-value: 0; Score: 99.77

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ammonium transporter 3.9e-64
    HMMPfam Ammonium transporter 1.6e-20
    HMMPfam Ammonium transporter 0.00000087
    HMMPfam Ammonium transporter 2e-35
    superfamily Ammonium transporter 1.8e-46
    superfamily Ammonium transporter 4.6e-18
    superfamily Ammonium transporter 1.3e-18
    PatternScan Ammonium transporter, conserved site 0
    HMMPanther AMMONIUM TRANSPORTER 1 2.8e-130
    HMMPanther Ammonium transporter 2.8e-130
    HMMPanther AMMONIUM TRANSPORTER 1 3.9e-59
    HMMPanther Ammonium transporter 3.9e-59
    HMMPanther AMMONIUM TRANSPORTER 1 0.0000001
    HMMPanther Ammonium transporter 0.0000001
    HMMPanther AMMONIUM TRANSPORTER 1 2.8e-83
    HMMPanther Ammonium transporter 2.8e-83

    See the detailed result >

    AT4G13510.1

    Model type
    Protein coding
    Short Description
    ammonium transporter 1;1
    Curator Summary
    Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake.
    Computational Description
    ammonium transporter 1;1 (AMT1;1); FUNCTIONS IN: ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, transport, protein polymerization, response to karrikin; LOCATED IN: nucleus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;3 (TAIR:AT3G24300.1); Has 11619 Blast hits to 11599 proteins in 2072 species: Archae - 224; Bacteria - 4688; Metazoa - 462; Fungi - 431; Plants - 505; Viruses - 0; Other Eukaryotes - 5309 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR