F07531

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07531

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07531

Determination of introduced cDNA(s)

  • RAFL05-13-D04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-13-D04 - Resource: pda02562

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-13-D04 - full reading
    GTAAAACTTA CATAATGGGA ATGGTTTTTG GTAAAATCGC TGTAGAGACT 
    CCTAAATACA CGGTGACTAA ATCCGGTGAC GGTTATGAGA TCCGTGAATA
    TCCACCAGCG GTTGCGGCGG AGGTTACATA CGATGCGTCG GAGTTCAAAG
    GTGATAAAGA CGGAGGCTTT CAGCTTTTGG CTAAGTACAT AGGTGTGTTT
    GGCAAACCGG AGAATGAGAA ACCGGAGAAA ATTGCTATGA CTGCACCGGT
    GATCACTAAG GAAGGTGAGA AGATTGCGAT GACTGCTCCG GTGATTACTA
    AGGAGAGTGA GAAGATTGAG ATGACTTCTC CGGTTGTAAC TAAGGAAGGT
    GGTGGAGAAG GAAGGAAGAA GTTGGTGACG ATGCAGTTTT TGTTGCCGTC
    GATGTATAAG AAGGCGGAGG AGGCACCACG TCCAACGGAT GAGAGGGTTG
    TGATTAAGGA GGAAGGAGGG AGGAAGTATG GTGTGATTAA GTTTAGTGGT
    ATAGCGTCGG AGAGTGTGGT GAGTGAGAAG GTGAAGAAGC TGAGTAGTCA
    TCTTGAGAAA GATGGGTTTA AGATCACCGG AGATTTCGTT CTTGCTAGGT
    ATAATCCTCC ATGGACGTTA CCACCGTTTA GGACCAATGA GGTCATGATT
    CCTGTTGAAT GAATTTGATT CAAAGTTTCC TGCTTTTGGT TTCAAAGAAC
    TTGTTTTTAT TTTGTTTCAC TGTGTTTGTA GTTGTAAGAA GCATAACAAT
    AATGTATACA AATCTGAGCT TTTGAAGTTA AATACTATAA AATGAATT

    Gene models with high sequence identity

    1. AT2G37970.1 [+] show detail - SOUL heme-binding family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam SOUL haem-binding protein 1.2e-40
    HMMPanther HEME-BINDING PROTEIN-RELATED 4.8e-82
    HMMPanther SOUL haem-binding protein 4.8e-82

    See the detailed result >

    AT2G37970.1

    Model type
    Protein coding
    Short Description
    SOUL heme-binding family protein
    Computational Description
    SOUL-1; FUNCTIONS IN: binding; INVOLVED IN: N-terminal protein myristoylation, red or far-red light signaling pathway; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT3G10130.1); Has 1375 Blast hits to 1375 proteins in 156 species: Archae - 18; Bacteria - 186; Metazoa - 71; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 927 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR