F07537

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07537

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07537

Determination of introduced cDNA(s)

  • RAFL09-17-E08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-17-E08 - Resource: pda02023

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-17-E08 - full reading 
    GTCGTCACTT AACCGAGAAA GCAAAAGAGA AGAAGAAGAA GGAATCGAAA 
    AATGAGGACT CCGATCCACG CGGTTTCGAC ATGGGTGAGG AGGCAGCCTC 
    CAAAGGTGAA AGCTTTCCTT GCCGTCGTAT CTGGCATGGC GGCTCTTGTT 
    CTCCTCAAAC TCATCGTTCA CGATCACGAC AATCTCTTCG TTGCCGCCGA 
    AGCTGTTCAT TCTATTGGAA TCTCTGTTCT TATCTATAAA CTCATGAAGG 
    AGAAGACTTG TGCTGGATTG TCATTGAAAT CTCAGGAGCT TACGGCGATA 
    TTTCTAGCTG TGAGGCTTTA TTGCAGTTTT GTAATGGAAT ATGATATACA 
    TACCATTCTG GACTTGGCTA CTTTGGGAAC AACTCTCTGG GTTATATATA 
    TGATCCGTTT TAACCTCAAA ACTACTTACA TGGAGGAAAA AGACAACTTC 
    GCTCTCTATT ATGTGCTGGC GCCCTGTGTT GTGCTAGCTG TATGGATTCA 
    TCCATCAACG TCACACAATA TATTGAATAG AATATCCTGG GGATTCTGTG 
    TTTACCTCGA AGCTGTTTCA GTACTGCCAC AGTTGAGAGT GATGCAGAAC 
    ACAAAGATTG TCGAACCCTT CACGGCTCAT TATGTTTTTG CACTTGGAGT 
    AGCAAGATTT TTTAGCTGTG CACACTGGGT TTTACAGATG ATGGACACGC 
    ACGGACGACT GCTTGTAGTG CTGGGTTATG GACTATGGCC ATCGATGGTT 
    ATAATCTCAG AAATAGTCCA AACATTCATA TTGGCAGATT TCTGTTACTA 
    CTACGTTAAA AGTGTTTTCG GTGGCCAGCT TGTTCTAAGG CTTCCATCTG 
    GGGTTGTGTA AGTTATAAAG GAAAAAAGAT AAGACACATT ATGACGAAAT 
    TTGTTACACG AAGATAGATC TCAGCTTGGT GTAATCTGAG TAGCCTCTGG 
    TTACTCTCAA GTTACTCCCT CAGGCCAAGT CCTAATTCTA TTAACTGTGT 
    TGTATATTTT TGTGTGGGTC ATCATCATAG ACAGTCCCTT GGATATTATT 
    GACATGATTT TTTCCACTGC ATTTGTGCTA AATTATCCTT GGTTCCCACG 
    GCAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT2G21190.1 [+] show detail - ER lumen protein retaining receptor family protein
      E-value: 0; Score: 99.91

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ER LUMEN PROTEIN RETAINING RECEPTOR 7.2e-199
    HMMPanther ER lumen protein retaining receptor 7.2e-199
    FPrintScan ER lumen protein retaining receptor 7.6e-14
    FPrintScan ER lumen protein retaining receptor 7.6e-14
    FPrintScan ER lumen protein retaining receptor 7.6e-14
    FPrintScan ER lumen protein retaining receptor 7.6e-14
    HMMPfam ER lumen protein retaining receptor 9.2e-41

    See the detailed result >

    AT2G21190.1

    Model type
    Protein coding
    Short Description
    ER lumen protein retaining receptor family protein
    Computational Description
    ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT4G38790.1); Has 889 Blast hits to 889 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 314; Fungi - 178; Plants - 231; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR