F07548

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07548

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07548

Determination of introduced cDNA(s)

  • RAFL06-82-G14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-82-G14 - Resource: pda03829

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-82-G14 - full reading 
    AATTAGTTAG AGTTTAGAGA AACAGAAAAC TAAAGAAAAA AAATATGCAA 
    TCGGCGAAAC AGAAGATAAG CGATATGGCT AGTACAGCCA AGGAGAAGAT 
    GGTGATATGT CAAGCAAAAG CTGATGAGAA GGCAGAGCGG GCGATGGCGA 
    GGACGAAAGA GGAGAAAGAG ATAGCGCACC AACGGAGAAA GGCGAAGGAA 
    GCAGAAGCGA ATATGGATAT GCACATGGCT AAAGCGGCTC ATGCGGAAGA 
    CAAGCTTATG GCTAAGCAAT CTCACTACCA TGTTACTGAT CATGGTCCCC 
    ACGTGCCTCA ACAAGCGCCT GTACCGGCTC CCGCACCGGT TATGGGACAC 
    GGTTACGGGC ATAATCCTAC CGGAGTTACC TCAGTGCCTC CTCAGACCTA 
    TCATCCGACT TATCCTCCGA CGGGACATCA TAATCATCAT CACTACTAAT 
    CCGACCTACT ATCTTTTTAA AATAAAAAAA AATAACCTGA TTATACGTGT 
    GGGGCCTTTA GTGGTTTTCT TAGTTCTTAG GCATGTGCTT AAAATTAAGT 
    GATTAAGCGT TGAGTTGATG TTTGCAACTT TGCGTACACG TTTGTTGATA 
    AATATTTTGG TTATTCCATG CACTATCTTG TATGTCAAGA GCGTGCGCGA 
    CTCACGACAT CACTTCCATT TGACTTTCTG AGTATATCAT TCATTTAATA 
    AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT1G32560.1 [+] show detail - Late embryogenesis abundant protein, group 1 protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Late embryogenesis abundant protein, group 1 5.9e-31
    BlastProDom Late embryogenesis abundant protein, group 1 5e-31
    Coil coiled-coil 0

    See the detailed result >

    AT1G32560.1

    Model type
    Protein coding
    Short Description
    Late embryogenesis abundant protein, group 1 protein
    Computational Description
    Late embryogenesis abundant protein, group 1 protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 1 (InterPro:IPR005513); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 1 protein (TAIR:AT2G35300.1); Has 218 Blast hits to 218 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR