F07549

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07549

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07549

Determination of introduced cDNA(s)

  • RAFL09-69-H12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-69-H12 - Resource: pda06659

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-69-H12 - full reading
    AATTTCGTTT CTTTCCTTCT TCACTCGTTA AATTTTCGTT TAATCAGACA 
    TCGATCTCAA AAGCTCTCAT CTTCAATCTC ATTGAGAATG GATCATGATC
    TCGAGATCTT CCCTTTACTC TCCTACGTCC TCCACCATTC CGATCCCGCT
    TCTCACGCGC CACCGTCTCT AGCGATTCAG CAATCTCTTG CGAATCGTTA
    TCCCCTTCTC ACCAATCCTT ATGTAATCTC CTCGTTGATT GAATCAATTC
    CCAGTACAAT CACGCAGACC CTTTTCGTAT TTGGCTCTCT TGGGCCACGA
    CCTGATCCTT TAGCTGTCTC TTCTGCTCGG TCTAAGATCC GAGAGATCAA
    AGAGAATGAT TCTTTATCGC CGGAAGATGC GGCTAAGGAA GAGCAGGTTT
    ACGCTGCGGT TGTGAGTTTA GAGGAAGTTC ATGAAGGATA TGAGAAGCAG
    TTAAGAGATT TGGAGGAGGA GATTGGTAGG GTTTATGCTT CGGCGGTTGA
    ATCATTGAGC GGTGGTGATG AAGTGAATGA GGAGGTTTTA GCGGTGATTA
    AAGACGCTGA AGATGGTGGA GTCGTTGAAA GGATTGATCT TTCTGATCAT
    GAGCTTAAGC TTCTTCCTGA TGCTTTAGGG AAAATCGTCG GTTTGGTTTC
    ACTGAATGTC TCTCGTAACA ATCTCAGGTT TCTACCTGAT ACAATCTCAG
    GACTTGAGAA ACTGGAGGAG CTAGATTTAT CTTCAAACCG TCTCGTGTTT
    CTTCCCGACT CTATTGGACT GTTACTTAAT TTGAGGATCT TAAATGTGAC
    GGGGAACAAG CTAACTTTAC TCCCAGAAAG CATTGCGCAA TGCAGGTCAC
    TGGTAGAGTT AGATGCCAGC TTCAACAACT TGACTTCTTT GCCTGCAAAC
    TTCGGATACG GATTACTCAA TCTCGAAAGG CTATCGATCC AGCTGAACAA
    AATCCGTTTC TTCCCCAATT CCATATGTGA GATGCGTTCT CTAAGGTATC
    TCGACGCACA CATGAACGAA ATCCACGGCC TTCCAATCGC TATAGGGAGA
    CTCACAAACC TTGAAGTCAT GAACTTGAGC AGCAACTTCA GCGACTTGAT
    TGAACTTCCT GACACAATCT CTGATTTAGC TAACTTGAGG GAGCTAGATC
    TCAGCAACAA CCAGATCAGA GTCTTGCCTG ACTCGTTTTT CAGGCTGGAG
    AAGCTGGAGA AACTGAACTT GGACCAGAAC CCTTTGGAGT ATCCCCCACA
    AGAGATGGTT AACCAAAGCG CTGAAGCAGT TCGAGAGTTC ATGAGGAAGA
    GGTGGGAAGA GATGGTGGAG GAAGAGCAAT TGAGGAGTGT GATTGAAGCT
    GAGAAGCAAC AAGGAGGAGC AACAGGTTGG CTCTCATGGG GGAGCTCCAT
    TGTTACTAGC CTTTTCTCTG GAGGTACTCA TGGTGGTGCA GCTAAGAAGC
    CTAAAAACTC ATTTTTGGAT GAACAGCTCT GATTTTTTTT TTTTTTTGGC
    TTTACTATAT CTAGCTAGCT TTGACGTTTT TTAGAAAAAG AAAAAAATCC
    GGAGTTTGGA CGTTTGACTT GACTGTATTT CAATGGGCCT TTAATAACCC
    TTCTGAGGCC CATCTTGGGG TTATGTTTGG GTAACATTAC T

    Gene models with high sequence identity

    1. AT1G12970.1 [+] show detail - plant intracellular ras group-related LRR 3
      E-value: 0; Score: 99.88

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Toll-like receptor, leucine rich repeat-containing 2.2e-05
    FPrintScan Toll-like receptor, leucine rich repeat-containing 2.2e-05
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5.3e-155
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5.3e-155
    HMMPfam Leucine-rich repeat 0.018
    HMMPfam Leucine-rich repeat 0.16
    HMMPfam Leucine-rich repeat 0.11
    HMMPfam Leucine-rich repeat 0.00065
    Gene3D no description 3.4e-40
    superfamily L domain-like 6.6e-50
    Coil coiled-coil 0
    HMMSmart no description 39
    HMMSmart Leucine-rich repeat, typical subtype 24
    HMMSmart no description 14
    HMMSmart Leucine-rich repeat, typical subtype 0.45
    HMMSmart no description 12
    HMMSmart Leucine-rich repeat, typical subtype 0.75
    HMMSmart no description 5
    HMMSmart Leucine-rich repeat, typical subtype 34
    HMMSmart Leucine-rich repeat, typical subtype 170
    HMMSmart Leucine-rich repeat, typical subtype 34
    HMMSmart no description 210
    HMMSmart no description 4.9
    HMMSmart Leucine-rich repeat, typical subtype 1.3e-05

    See the detailed result >

    AT1G12970.1

    Model type
    Protein coding
    Short Description
    plant intracellular ras group-related LRR 3
    Curator Summary
    Encodes PIRL3, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.
    Computational Description
    plant intracellular ras group-related LRR 3 (PIRL3); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 2 (TAIR:AT3G26500.1); Has 74858 Blast hits to 31563 proteins in 1228 species: Archae - 19; Bacteria - 7206; Metazoa - 30749; Fungi - 2417; Plants - 30057; Viruses - 17; Other Eukaryotes - 4393 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR