F07611

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07611

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07611

Determination of introduced cDNA(s)

  • RAFL08-16-I18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-16-I18 - Resource: pda04906

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-16-I18 - full reading
    GTGTGTTCTG CCAAAGTTTC TCTGCAGCTT CTCCTCTTCT CAGAAATTAG 
    GGTTCCGTCT CAAATTACGA GCAGATCTCG TACTCTCTGA TGTCTGAAGA
    TCCGGAGTAC CGTTGCTTCA TTGGTGGGCT TGCTTGGACA ACGTCTGATC
    GTGGTCTCAG AGATGCCTTT GAGAAGTATG GTCACCTCGT TGAGGCCAAG
    GTGGTTCTTG ACAAGTTTTC TGGTCGCTCC CGTGGTTTTG GATTCATCAC
    TTTCGATGAG AAAAAAGCTA TGGATGAAGC TATTGCAGCA ATGAATGGAA
    TGGATTTGGA TGGGCGAACT ATCACTGTTG ATAAAGCTCA GCCTCATCAG
    GGTGGTGCAG GCAGAGATAA TGATGGTGAC CGTGGTCGAG ACCGTGGATA
    TGATCGTGAT CGCAGTCGTC CCTCTGGTGG GCGAGGTGGT GGAGATTGCT
    TTAAATGTGG CAAGCCTGGA CATTTTGCAA GAGAGTGTCC TTCTGAAAGT
    AGTAGAGATG GTGGTGGAAG GTTCAGCTCA AAGGATGATA GGTACAGTTC
    GAAGGACGAT AGGTATGGTG CAAAAGATGA TAGGTATGGT GCAAAGGAGG
    ATAGGTATGG TGCAAAGGAT GATAGGTACA GCTCCAAGGA TGATAGGTAC
    AGCTCCAAGG ATGATAGGTA TGGTAGTAGG GATGGTGGAG GTAGTCGCTA
    TGGACCTGAT CGCAGTGGTG AACGCGCTGG AGGACGCAGC CGGGATGGTG
    GCAGCCGTGG AGCTCCAGGA GGTGAGAGGC ACAGTCGTGC TCCATATGAC
    CGCCCCAGAG CTGGTGGTTT CCACTAGAAT TCTACTCCAA AGGTTAAAGA
    AGTTGAAGGT TTCTGCTTTC AGCTCGTGTC AAGTCAAAGT TACGCTTGAT
    GGTCTATTTT CTTCAATGTA TTTGGATAGC TCGAGAAAGA AGATGTGTTC
    TCTATTTTGG CCCTAAACTC AAGAGTCGAC TATGTTCCTA AAGTGCTCTC
    TCTCCTTTTG ATATGTTGAT CCCTATGGAA ACCTTGTGCT TGGTTGGTTT
    GAGACAATTT GAGATGTGCT ACTTTATGCT TATCGTAATG AATGCGTGGG
    TTATCCCCCA ACACCAAATA TGCAAAAGCC TCAGGATGGT CTGATACTCG
    GGTTTAGCCG TGAAAATTAA AGACTGATCT ATAAAACTTG TGATGGGATT
    GGGAAATATA CATTGCTGAT TGATACTTGG CTACTGGAAC TCAAACATCC
    CTTCATGAGC AACAAATTGT CATTTTCAGG AAAAAGATTG ACTTTGTGCA
    ATTTTAGATC TTGGCAAGTC AAATCCAATA GTTTTCTTCA ACTAGGGAGA
    TTTCTACAGC CAAATGGTCT CTGGTTGGCT CGTCTAGTAT AGCTCACTGG
    GTTTATCTTC GATCTATTCT TTGTGGGTTC TTCGTGCCTC TTCGTCTACT
    TTGTTTCTTG CTCGTGACCT CTACCTCTGC CTTTGATTCT CAAGCTCTAA
    ACTCCAGGAA TTGGGAAATG GTGTTAATGT ATATATAGTT AATATACGCT
    TGAATAGGTA TCCTTACTTT GATAATTTGT TGAAATTGCA TACATAAATA
    GGTCACACGA GTTATGTCGG GAAAACACTG ACTTGATTAT TTTATACAAG
    TGAATAGTAT ATGTATGGTT AGAACTTAGA TGCATGACTA GTTCGTTCAC
    CTTCTTTCAC AATTTTGTAT TGCATACATA CATACATTGC TTAGGTGAAT
    ATATAATCAA TTTACCATAA ATAAATGACT TTGTAAGTCT CATAATTTAA
    GACTTTGTTT CTAACATAAA GAAAGACTTT GTAGAACATA TGAGTTGGTG
    TATAGCTTAA ACGTTGACTC AATTATTTGA TAGAAATCGA ATAGCATAGC
    TATTCGACGC CACTATTCGG TTACTCGTAC CTCGACCACA CCAAATTAAG
    AACACTTACC GGAAGAAGAT AAAAGGAGAA AATGGAAACT AATCTCTTGT
    TGGTAAAGTG TGTCTTATTA GCATCATGTC TCATACATCC CCGTGCTTGC
    TCTCCTTCTT GCAATTTCCC GGCGATATTC AACTTCGGCG ACTCTAACTC
    CGACACAGGT GGCCTTTCTG CCTCTTTCGG ACAAGCCCCT TACCCAAATG
    GCCAAACCTT CTTCCACTCC CCTTCCGGTC GTTTCTCAGA TGGTCGACTC
    ATCATTGACT TCATAGCGGA GGAGTTAGGT TTACCATACC TAAATGCTTT
    CTTAGACTCC ATCGGTTCAA ACTTCAGCCA TGGTGCCAAT TTCGCCACCG
    CTGGCTCCAC CGTCCGGCCA CCAAACGCAA CCATCGCTCA GAGCGGTGTG
    AGTCCAATCT CTCTCGACGT TCAATTGGTC CAATTCTCCG ATTTCATCAC
    ACGATCACAA CTCATTCGCA ATCGAGGTGG AGTGTTTAAG AAATTGCTTC
    CCAAGAAAGA GTATTTCTCT CAAGCATTGT ACACATTCGA CATCGGTCAG
    AACGATCTCA CCGCTGGACT AAAACTTAAC ATGACTTCAG ATCAAATCAA
    GGCTTATATA CCAGATGTTC ATGATCAGCT CTCTAACGTC ATTCGTAAGG
    TGTATAGTAA AGGAGGAAGA AGATTTTGGA TACACAACAC AGCTCCACTT
    GGTTGTTTAC CTTATGTTTT AGACCGGTTC CCAGTACCGG CTTCTCAAAT
    CGACAATCAC GGTTGTGCAA TTCCGCGTAA TGAGATTGCT CGATACTATA
    ACTCTGAACT TAAAAGAAGA GTGATTGAGT TGAGAAAAGA GCTCTCTGAA
    GCTGCGTTTA CTTATGTTGA TATCTACTCT ATCAAGCTTA CTCTCATCAC
    TCAAGCCAAG AAACTCGGTT TTAGGTATCC TTTGGTGGCT TGTTGTGGAC
    ATGGTGGGAA GTACAATTTC AACAAGCTTA TTAAATGTGG AGCTAAAGTT
    ATGATCAAAG GGAAAGAGAT TGTGCTTGCT AAGTCTTGTA ACGATGTGTC
    GTTTAGAGTT AGCTGGGACG GTATACATTT CACTGAAACG ACAAACAGTT
    GGATCTTTCA GCAAATAAAC GACGGGGCGT TTTCGGATCC TCCTCTTCCT
    GTGAAGTCTG CCTGCACCAG ATAGAAGAAC TTAGGGAATC ATATGACCAA
    AGTGTCCTTG AAAATGGGGA CAAATAAAAG TTCTTTGGAA TATTTGTTTT
    TTGTCAAGTT CTAAGAAAAT TCTCATGAAA GTGAAATCAT

    Gene models with high sequence identity

    1. AT3G26430.1 [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
      E-value: 0; Score: 99.97

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart RNA recognition motif, RNP-1 2.1e-26
    HMMSmart Zinc finger, CCHC-type 3.5e-06
    HMMPanther DC50 (DC23) 5.5e-59
    HMMPanther RNA-BINDING PROTEIN 5.5e-59
    HMMPanther LATERAL SIGNALING TARGET PROTEIN 2 2.2e-05
    HMMPanther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 2.2e-05
    superfamily RNA-binding domain, RBD 3.8e-26
    superfamily Retrovirus zinc finger-like domains 1.5e-06
    ProfileScan RNA recognition motif, RNP-1 19.28
    ProfileScan Zinc finger, CCHC-type 11.565
    HMMPfam Lipase, GDSL 1.1e-43
    HMMPfam RNA recognition motif, RNP-1 8.2e-21
    HMMPfam Zinc finger, CCHC-type 2.2e-08
    Gene3D Nucleotide-binding, alpha-beta plait 4.8e-28

    See the detailed result >

    AT3G26430.1

    Model type
    Protein coding
    Short Description
    GDSL-like Lipase/Acylhydrolase superfamily protein
    Computational Description
    GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: alpha-fucosidase 1 (TAIR:AT1G67830.1); Has 3218 Blast hits to 3172 proteins in 104 species: Archae - 0; Bacteria - 74; Metazoa - 0; Fungi - 6; Plants - 3136; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR