F07624

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07624

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07624

Determination of introduced cDNA(s)

  • RAFL16-10-G04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-10-G04 - Resource: pda19393

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-10-G04 - full reading
    TTCTTCTCTC GATCTCGGAT TTTTCTGATC GATGGCGGTT CCCACACTCT 
    GTATCGCCGA TGGAATCTAC CCCACTGCTT TTTTCTACCG GAATTCAGTC
    CGACGACTGA CCTCCGTCGC GCATGATCGG TTTACGAACC CGAAATTCGG
    AATCGATGGA CGTCTACGGA ACGGACCGAA GGTGACGGCA ACGGTGAATC
    CATATACGTA CACGGAGGCG GCGCAGCCCG AAGAGCGGAA GAGTTTGACG
    GATTTTTTGG TGGAAGCTAG AGATTTCGTT AGATCTGACG GCGGAGATGG
    TGGTCCACCT CGGTGGTTCT CTCCCTTGGA ATGTGGCGCA CGCGCTCCAG
    AATCTCCTCT TCTTCTCTAC TTACCTGGGA TCGATGGTAC TGGATTAGGG
    CTCATTCGCC AGCATAAGAG GCTTGGAGAG ATATTTGACA TATGGTGCCT
    TCACTTTCCA GTCACTGATC GTACCCCTGC TCGAGATCTT GTGAAGCTCA
    TTGAGAGAAC AGTTAGGTCA GAGTACTTCC GTTTACCAAA GAGACCCATA
    TACATAGTTG GAGAATCTAT TGGAGCTTGT CTTGCTCTAG ATGTTGCAGC
    CAGTAACCCT GACATTGATC TTGTCTTGAT TCTAGCTAAT CCAGTCACAC
    GTGTCAACAA CTTCATGTTG CAACCTTTAT CGAGTCTATT GGAAATTTTG
    CCAGACGGAG TTCCCAGCTT CCTGGAGGAG AATTTTCGGT TTGAACAAGG
    TTATCCGTTT GCAGCAATGT TCGAGACTAT GCTGAATGAA ACTGATGCCG
    CACAGATCGG TGGAGGGCTA TTAGGAGACC TCTTTGCAAC TTCAGTTAAC
    CTGCCGACTC TGGCTAGGAT CTTTCCAAAG GACACACTTC TATGGAAGCT
    TCAACTGCTT AAGTCTGCTT CAGCATCTGC TAAGTCTCAC ATGTACACAG
    TCAAAGCCCA AACACTTATA CTTTTGAGTG GACGCGATCA GTGGTTACTA
    AACAAGGAAG ACATTGAGAA ACTCCATTGT ACATTGCCGA ATTGTGAAGT
    CCGTAAGTTC GAGAATTACG GACAGCTTCT CTTTTTGGAG GATGGGGTAG
    ATCTGGTGAC TATCATCAAG TGTACTTATT ATTATCGCCG TGGAAAATTG
    CTTGATTACG TTTCTGATTT CATTCTGCCT ACCCCATTTG AGCTCAAAGA
    GTATGAAGAA TCACAAAGAT TGCTAACTGC TATAACCTCC CCAGTCTTTC
    TCTCAACTCT AGATAACGGT ACAGTAGTAA GATCACTTGC GGGAATACCT
    TCAGAGGGAC CGGTTCTCTA TGTTGGCAAT CACATGTTGC TTGGTACCGA
    ATTGCGTCCA GCAGCAATTC ATTTCCTGAA AGAAAAGAAC ATTCTGTTGC
    GAGGACTTGC ACATCCAGTG ATGTTTGCCA AAAAATATGG CTCAAAACTC
    CCTGATATGC ATATGTTCGA CTCAGTTAGG ATGATAGGCG CAGTTCCTGT
    CTCAAATATC AATTTCTATA AACTACTTCG CTCAAAGGCT CATGTGGTTT
    TGTATCCTGG AGGTGTCCGT GAAGCTTTGC ACAGAAAGGG TGAAGTATAC
    AAGTTGTTTT GGCCAGAACA TTCAGAGTTT GTAAGGACCG CATCTAAATT
    TGGAACAAAA ATCATTCCTT TTGGGGTTGT TGGTGAAGAT GATCTCTGTG
    AAGTGGTCTT CGATTACAAT GATCAAATGA AGATCCCTTT CCTGAAGAAT
    CTTATAAAAG AGTTATCACA AGACTCTACT TACTTGAGGA ACGGTGAAGA
    AGGAGAAGTA GGAAACCAAG ATTTGCATAT GCCTGGAATA GTTCCCAAGA
    TGCCGGGACG GTTTTACGTA TACTTTGGGA AACCAATTTA CACAGAAGGT
    AGAGAGGACG AGCTAAATGA TAAAGAGAAA GCTCATGAGG TTTACTTGCA
    GGTCAAGTCT GAGGTAGAAA GATGTATGAC CTATTTGAAG ATCAAAAGAG
    AAGGTGATCC TTATAGAAAC ATTTTAGCGA GGTCCCTCTA TCACTTCTCA
    CATGGTTTCT CTTCCCAAGT CCCAACCTTT GACCTCCGAA ATCAATAATT
    TTAGTTACTG GATTTGTGAC TTAATTAACT TTGTGGAATT TGGATATGTT
    ATTGTAACTT CTAAAAGTAC AAGGCTGTTG ATGTAGAAAT TGAGTAAGTT
    CGGGGTGTTA TGTTAAAAAT TCATGCAAAA AA

    Gene models with high sequence identity

    1. AT5G41130.1 [+] show detail - Esterase/lipase/thioesterase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Diacylglycerol acyltransferase 0.0000002
    Gene3D no description 0.00000023
    HMMPanther ALPHA/BETA HYDROLASE 0.00011
    HMMPanther ALPHA/BETA HYDROLASE RELATED 0.00011
    superfamily alpha/beta-Hydrolases 3.6e-17

    See the detailed result >

    AT5G41130.1

    Model type
    Protein coding
    Short Description
    Esterase/lipase/thioesterase family protein
    Computational Description
    Esterase/lipase/thioesterase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Diacylglycerol acyltransferase (InterPro:IPR007130), Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: Esterase/lipase/thioesterase family protein (TAIR:AT5G41120.1); Has 500 Blast hits to 489 proteins in 151 species: Archae - 0; Bacteria - 285; Metazoa - 8; Fungi - 0; Plants - 158; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR