F07625

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07625

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Original: F07625

Determination of introduced cDNA(s)

  • RAFL09-48-N10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-48-N10 - Resource: pdz87837

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL09-48-N10 - 5 prime EST 
    GTCCACGTCA CCTATTGTGT ATCTCATCAT CACCATGGAC AAGACATTTT 
    TCTCTAGCAA CGAAGGGAAA CCAATTACAT GCAAAGCANC AATATGTAGA 
    AAAGCAGGAG AAGCATTGGT GATTGAAGAC ATCCACGTGG ATCCACCCCA 
    AGCTTATGAA GTTAGGATTA AGATTTTATG TACTTCTCTA TGTCACACTG 
    ATCTTACTTT CTGGAAACTA AGCTTTGGAC CAATTTCAAG GTTTNCTAGG 
    ATNCTTGGAC ACGA

    Gene models with high sequence identity

    1. AT1G22430.2 [+] show detail - GroES-like zinc-binding dehydrogenase family protein
      E-value: 1e-138; Score: 98.83

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL09-48-N10 - 3 prime EST 
    GTTTAAGAAA ATGTTAAGGG GTTTGGACTA CCAAATGATA AGTTTGTAGC 
    TCGGGTGGAA AGAAAAAAAA TGGCAAGGTA ACAAGACAAA GCATCTTGAA 
    AGACAAAGGA AGATAATCTA AAAAAGATCC ACGAGAAGAT TATAAAGTGC 
    AAATATGAAC CTGGATAGTT ACTTATCCAT CATACAATGC AGCGGAGAGA 
    CTTTACTTCC TCTAATAAAG CGAAAGCCTT ATTAATTGCT TTGAAATTCA 
    GCTTCGTGTG TAATGAAACT ATCCAGATTG AGCTCCTTTT ATAGGTAATG 
    ATCCACTAGA ATGGGAATAT CAAGTTGGGA TTTCAGACCA TCGAACAGGC 
    TTCCGCAAAT AACTCTGCCC TCTTAAAAGA TTGAACCTAC CA

    Gene models with high sequence identity

    1. AT1G22430.2 [+] show detail - GroES-like zinc-binding dehydrogenase family protein
      E-value: 4e-170; Score: 95.98

    AT1G22430.2

    Model type
    Protein coding
    Short Description
    GroES-like zinc-binding dehydrogenase family protein
    Computational Description
    GroES-like zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding dehydrogenase family protein (TAIR:AT4G22110.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR