F07639

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07639

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07639

Determination of introduced cDNA(s)

  • RAFL09-69-M02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-69-M02 - Resource: pda06672

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-69-M02 - full reading 
    CTATCTCTGA GGTCCAAACT CTTCGGTGGA GGAGAAGAAC TGAAACGGAA 
    ATGAGATCCC CTAGAACCTT GGAGGTTTGG AAGCTAGGCA CTGTCAACTA 
    TTTGAAATCC CTTAAACTGC AGGAGAAATT AGTTTCAGAG AGAAAAGCTC 
    ATCAGATTCC AGATACCCTC CTCTCGCTTC AGCATCCACC AACTTATACG 
    CTCGGAAAGC GTAGAACCGA TCACAATCTA CTTATCCCTG AATCTGAACT 
    TACAAAAATC GGAGCTGAAC TTCATTATAC TCAAAGAGGA GGAGACATCA 
    CCTTCCATGG CCCTCATCAA GCCATCTTAT ATCCCATCAT TTCCTTACGC 
    AGCATTGGTT TTGGTGCTAG GAACTACGTG GAGACATTGG AGCGGTCAAT 
    GATCGAGTTT GCTTCGATTT ATGGCGTGAA AGCTCGAGCA GGAAACAAAT 
    GTGAGACTGG GGTTTGGGTT GGGGATAGGA AGATCGGTGC TATTGGGGTT 
    AGGATATCTT CTGGAATCAC TAGTCATGGT TTGGCCTTAA ATATAGATCC 
    TGATATGAAG TACTTTGAGC ACATTGTGCC TTGTGGGATT GCTGATAAAG 
    AAGTTACATC TTTGCGAAGA GAGACGGATA CTCTGCTTCC TTCAGAAGAA 
    GTGATTCATG AACAGTTGGT TTCTTGTTTA GCCAAAGCGT TTTCTTATGA 
    TGATGTTGTC TGGAAGGAAG ATCCTTCACT CATTTTGGAC ACCCAAGATA 
    AAGAATAATC CGGTTTGATC CGGTTTTGAT TTATTGTCTA CAAAAAATGT 
    TATTATTTTT TGACGTGATG TGGATTTCTG ATATTGTCTT ATTCATTCTC 
    AAATTTTCAT TAAAACC

    Gene models with high sequence identity

    1. AT1G04640.1 [+] show detail - lipoyltransferase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Octanoyltransferase 1.7e-34
    BlastProDom LIPB_ARATH_Q9SXP7; 6e-22
    HMMPanther LIPOATE-PROTEIN LIGASE B 3.2e-68
    PatternScan Octanoyltransferase, conserved site 0
    HMMPfam Biotin/lipoate A/B protein ligase 6.2e-13
    HAMAP Octanoyltransferase 30.027

    See the detailed result >

    AT1G04640.1

    Model type
    Protein coding
    Short Description
    lipoyltransferase 2
    Curator Summary
    Lipoyltransferase, located in mitochondria but not found in chloroplasts
    Computational Description
    lipoyltransferase 2 (LIP2); CONTAINS InterPro DOMAIN/s: Octanoyltransferase (InterPro:IPR000544), Octanoyltransferase, conserved site (InterPro:IPR020605), Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: Biotin/lipoate A/B protein ligase family (TAIR:AT4G31050.1); Has 5700 Blast hits to 5697 proteins in 1675 species: Archae - 17; Bacteria - 3180; Metazoa - 102; Fungi - 137; Plants - 98; Viruses - 0; Other Eukaryotes - 2166 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR