F07642

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07642

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
T2  
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07642

Determination of introduced cDNA(s)

  • RAFL09-22-C19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-22-C19 - Resource: pda05617

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-22-C19 - full reading 
    GCTCTTCTTT AATCTGCTCT GTTCTTCTCT TTCCATTTCA GCGTTGACTT 
    AGTTATTGGG ATTTCTCAGA AGCAAAAATG GCGTCTCCGG CGACGTTTTC 
    AATTCTCTAG AACAAAACTT AACCTTCAGA TCAACCTCGT CGAGCGAAAA 
    TCTCCTTCAA AACTCTCGTT TCCTCTTTTA TTCAGAGACC AAGCAAAGTC 
    AACACCAATC AGATTTCCCG TCATAAGAGC TTCATCATCT TCGTCGGCGT 
    CAAATCATAA ACCTTCACTG CTTAAAACCA CCTTCATCAG CCTCACCGCA 
    GCCGCAGCTC TGTTCTCAGC ATCGTTTTAC TTCGTCAACA AACGCGCCGC 
    GATGACTCCA GTTGCTGTGG TAGAGACGAC ACTCGAGAAG CACCTCGAGA 
    CACAATCAAA CGATGTGAAT GCTTTATCAT TGCTGACGGA AATCAAATTT 
    AAGTCCGATA AACATGAGCA GGCGATTGTA TTTCTGGACC GTCTGATCGA 
    GATCGAGCCA TATGAACGAA AATGGCCGGC TATGAAGGCT CGGATTCTCT 
    CATACCACGG GAAAAGTGAA TCAGCAATCG AAGCTTTCGA GGAGATTCTC 
    GAAAAGGATC CGATACGCGT CGATGCTTAT CATTACTTGG TGATGGAGTA 
    TTACAACTCT AAACCTAAAT TAACAGAGAT AGAGAAGAGG ATCAACAAAG 
    TGATTCGAAG ATGCAAGAAG GAGAAGAAGA CGAAAGAGAT TCTCGGTTTC 
    AGAATGTTGA TCGCACAGAT TAGGTTTATT GAAGGAAAAT CAGTTGAAGC 
    AATTCGGATT TGTGAAGAGC TAGTGAAGGA AGATCCAAAT GATTTCACTA 
    TATATTTGTT TCAAGGAGTC GTGTATACAT TGATGAATAA GGGAGAGGAA 
    GCTGCGAAGC AATTTGAGCA TGTTGCTAGG GTTATACCAA GGAATCACCC 
    GTCTAGAGAG ACTGCCGCGA GGACCACGAA CTCAAATGAA TGGAGAGTCA 
    TCGTAGCTTA CGATAATGTC TACTGCTATT TATCTACATT TGCTAGGCTT 
    TCCATGGCTT CTTTGTTTAA TAAGTTTGGC TAAGTATGGT GGAAATTGAA 
    AAAGTTCAAA ACTCTC

    Gene models with high sequence identity

    1. AT3G09490.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 0; Score: 99.91

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Tetratricopeptide-like helical 4.1e-19
    superfamily TPR-like 1.3e-22
    HMMSmart Tetratricopeptide repeat 18
    HMMSmart Tetratricopeptide repeat 320
    HMMSmart Tetratricopeptide repeat 120
    HMMSmart Tetratricopeptide repeat 23
    ProfileScan Tetratricopeptide repeat 7.7
    ProfileScan Tetratricopeptide repeat 5.694
    ProfileScan Tetratricopeptide repeat 8.319
    ProfileScan Tetratricopeptide repeat-containing 17.008
    Coil coiled-coil 0
    HMMPanther TETRATRICOPEPTIDE REPEAT PROTEIN, TPR 0.0000000022

    See the detailed result >

    AT3G09490.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G02590.1); Has 963 Blast hits to 845 proteins in 243 species: Archae - 144; Bacteria - 518; Metazoa - 11; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR