F07649

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07649

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
stem (PO:0009047)
  • coiled (PATO:0000404)
    (Stem::Shape::spiral)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07649

Determination of introduced cDNA(s)

  • RAFL07-13-F20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-13-F20 - Resource: pda04211

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-13-F20 - full reading
    ACACCAAAAT CCATTAACAC ACACAAAAAC AAAATGAAAT TTTCAATCAC 
    ATTAGCTCTA TGCTTCACTC TCTCCATCTT CTTGATCGGA TCACAAGCCA
    AAGTTCCAGT CGACGACCAA TTCCGAGTGG TCAACGAAGG TGGCTACACC
    GATTACAGTC CCATCGAATA CAACCCCGAC GTACGTGGCT TCGTACCCTT
    CAGTGACAAC TTCCGTCTCT GTTTCTACAA CACAACCCCA AACGCATACA
    CTCTCGCTCT CAGAATCGGA AACAGAGTCC AAGAATCCAC TCTCAGATGG
    GTCTGGGAAG CAAACAGAGG CTCACCGGTC AAAGAAAACG CGACGTTGAC
    TTTTGGCGAA GACGGAAACC TCGTACTCGC TGAAGCCGAT GGACGCTTGG
    TATGGCAAAC GAACACAGCT AACAAAGGCG CCGTGGGGAT CAAAATCTTG
    GAGAATGGCA ATATGGTAAT ATACGATTCC AGTGGAAAAT TTGTATGGCA
    GAGCTTTGAT TCTCCCACCG ACACACTTCT CGTTGGACAG TCTTTGAAAC
    TCAACGGTCG GACCAAACTC GTAAGCAGAC TGTCTCCATC TGTCAACACA
    AACGGACCGT ACAGTCTCGT GATGGAAGCC AAGAAGCTAG TCTTGTACTA
    CACGACAAAC AAAACTCCGA AACCAATCGC TTATTTTGAA TACGAATTCT
    TCACCAAGAT AACACAATTC CAGTCAATGA CGTTCCAAGC TGTGGAAGAT
    TCCGACACAA CGTGGGGTCT AGTCATGGAA GGTGTCGATT CTGGTTCTAA
    ATTCAACGTT TCAACGTTCC TCTCACGGCC GAAACACAAC GCGACGTTGA
    GTTTTATTCG GTTAGAATCA GACGGAAACA TCAGAGTTTG GAGTTACAGT
    ACGTTGGCGA CTTCCACGGC TTGGGACGTG ACATACACGG CGTTTACCAA
    CGCCGACACT GACGGTAACG ACGAGTGTAG GATCCCTGAG CATTGTTTGG
    GGTTTGGTTT GTGTAAGAAA GGCCAGTGTA ACGCTTGTCC TAGCGACAAA
    GGGCTTCTTG GTTGGGACGA GACATGTAAA TCTCCAAGTC TCGCAAGTTG
    CGATCCCAAG ACATTTCACT ACTTCAAGAT CGAAGGAGCT GATAGTTTCA
    TGACAAAATA TAACGGTGGA TCATCGACGA CGGAGAGTGC GTGTGGGGAC
    AAGTGTACGA GAGATTGCAA ATGTTTAGGG TTTTTCTACA ATAGAAAGAG
    TTCGAGGTGT TGGTTGGGCT ACGAGCTCAA GACATTGACT AGAACCGGAG
    ATTCTTCCCT GGTTGCTTAT GTCAAAGCTC CTAATGCAAA CAAAAAGTCA
    ACTCTTTGAG GTCTGAAAGT CATATATATA TATGAAATTA TTGTGTTGTG
    TGTTTAATAA GGTTCGTTTG TGTACCTTTT TAAAAATAAA TGGTGTACTG
    ATTCTCAAGA TAAATCCTAA TACAAAGTGA AGTGAAAG

    Gene models with high sequence identity

    1. AT1G78850.1 [+] show detail - D-mannose binding lectin protein with Apple-like carbohydrate-binding domain
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 0.0000069
    superfamily Curculin-like (mannose-binding) lectin 1.9e-33
    ProfileScan Curculin-like (mannose-binding) lectin 15.075
    ProfileScan Apple-like 7.388
    HMMPfam Curculin-like (mannose-binding) lectin 2.3e-27
    HMMSmart Curculin-like (mannose-binding) lectin 5.9e-27

    See the detailed result >

    AT1G78850.1

    Model type
    Protein coding
    Short Description
    D-mannose binding lectin protein with Apple-like carbohydrate-binding domain
    Curator Summary
    curculin-like (mannose-binding) lectin family protein, low similarity to ser/thr protein kinase from Zea mays (GI:2598067); contains Pfam lectin (probable mannose binding) domain PF01453 but not the protein kinase domain of the Z. mays protein
    Computational Description
    D-mannose binding lectin protein with Apple-like carbohydrate-binding domain; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast, cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: phloem, stem, guard cell, cultured cell, callus; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609); BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT1G78860.1); Has 2743 Blast hits to 2677 proteins in 112 species: Archae - 0; Bacteria - 63; Metazoa - 5; Fungi - 0; Plants - 2661; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR