F07716

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07716

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07716

Determination of introduced cDNA(s)

  • RAFL09-83-O07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-83-O07 - Resource: pda08906

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-83-O07 - full reading 
    ATCGGAATAT CTCTCTTCCT CTGTTTCTTC GCCATTCTCT CAGCTTTTCT 
    CCTTCTTCTT CGTCTTTGTC AGAGTGAATG GAGCTGTGGA CAGAAGCTAG 
    AGCCTTAAAG GCAAGTCTAA GAGGAGAATC TACTATATCT CTCAAACATC 
    ACCAAGTGAT TGTGTCGGAA GATTTAAGCC AAACTTCTTC CTTGCCGGAA 
    GATTTCTCCG TTGAGTGTTT CCTCGATTTC TCAGAAGGTC AAAAAGAAGA 
    AGAAGAAGAA GTTGTCTCTG TTTCTTCTTC ACAAGAGCAA GAAGAACAAG 
    AACATGATTG TGTCTTTAGT TCACAACCTT GCATCTTTGA TCAACTTCCT 
    TCTTTGCCGG ATGAAGATGT GGAAGAGCTT GAATGGGTAT CTCGTGTTGT 
    GGATGATTGT TCATCACCAG AAGTTTCACT TCTCTTAACA CAAACACATA 
    AAACCAAACC AAGCTTCTCA AGAATTCCGG TTAAACCAAG AACCAAACGG 
    TCTCGGAACA GTTTAACCGG TAGTCGTGTT TGGCCACTCG TTTCAACCAA 
    TCATCAACAT GCAGCAACAG AGCAGTTGAG GAAGAAGAAA CAAGAAACTG 
    TCCTTGTGTT TCAACGAAGA TGCAGCCATT GTGGCACAAA CAACACACCA 
    CAGTGGAGAA CCGGTCCGGT CGGTCCAAAA ACCTTATGTA ATGCATGTGG 
    AGTCCGGTTT AAGTCTGGTA GGCTCTGCCC GGAATACAGA CCGGCGGATA 
    GTCCGACGTT CTCGAATGAG ATTCACTCAA ATCTTCATAG GAAGGTTCTG 
    GAATTAAGAA AGAGTAAAGA GTTGGGTGAA GAAACAGGTG AAGCTAGTAC 
    TAAATCAGAC CCAGTCAAAT TTGGCAGCAA GTGGTAGATA AGACTTAGGT 
    AAAATCTACT TTTTGTAACA TTATCTGTAG TGTTGTAATT TAACAACTTG 
    CTTCTTAACA TTTTGAAACT GTTTCAGGAA CTAGTCTTAA GTAAACAATG 
    GTTTTCTAT

    Gene models with high sequence identity

    1. AT4G34680.1 [+] show detail - GATA transcription factor 3
      E-value: 0; Score: 99.80

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glucocorticoid receptor-like (DNA-binding dom 8.7e-19
    PatternScan Zinc finger, GATA-type 0
    HMMPanther TRANSCRIPTION FACTOR GATA-3 0.00065
    HMMPanther TRANSCRIPTION FACTOR GATA (GATA BINDING FACTO 0.00065
    Gene3D Zinc finger, NHR/GATA-type 0.00047
    HMMPIR Transcription factor, GATA, plant 9.6e-154
    ProfileScan Zinc finger, GATA-type 11.952
    HMMSmart Zinc finger, GATA-type 3.7e-14
    HMMPfam Zinc finger, GATA-type 1.2e-15

    See the detailed result >

    AT4G34680.1

    Model type
    Protein coding
    Short Description
    GATA transcription factor 3
    Curator Summary
    Encodes a member of the GATA factor family of zinc finger transcription factors.
    Computational Description
    GATA transcription factor 3 (GATA3); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 7 (TAIR:AT4G36240.1); Has 1460 Blast hits to 1422 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 551; Plants - 835; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR