F07730

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07730

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07730

Determination of introduced cDNA(s)

  • RAFL05-09-B08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-09-B08 - Resource: pda01152

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-09-B08 - full reading 
    ACAACACAAC TTCAGCTTTA AGACAGCTAA AACTAAATAC AAAGAAACAG 
    AGATGGGTTT GGTTACAGAG GAGGTGAGAG CTAAGGCAGA GATGTACACC 
    GGAGATGAGA TATGTAGAGA GAAGACAAAG TGTTTCCTCA AGGAAATATC 
    TATGCCCAAT GGTTTATTAC CATTGAAGGA TATAGAAGAG GTTGGGTATG 
    ACAGAGAGTC AGGTGTTGTA TGGCTGAAGC AGAAGAAGAG CATCACTCAC 
    AAGTTCACAG AGATAGATAA GCTTGTCTCC TATGGAACCG AAGTCACAGC 
    CATTGTTGAG ACCGGGAAAA TCAAGAAGCT CACTGGAGTC AAAGCCAAGG 
    AACTTCTTAT TTGGGTCACT ATCAATGAGA TCTATACCGA GGAACCCCCT 
    ACCAAGATCA CGTTCAAGAC ACCGACCACA CTGTCCAGGA CTTTCCCGGT 
    CACAGCTTTT ATAGTCCCAG AAGAACCTGC CAAGGAGGAA CCTGCCAAAG 
    AGGAACCTGC CAAGGAGAAG AGCAGCGAAG CCACCGAGGC CAAGGAGGCT 
    GTTGCAATCA AGGAGGCTGT CGCAGTCAAA GAGGCGGCCT AATCAGCTCA 
    GCTTCAGCAG ATAAAAGAGA CCCGAATTTT TAAGTGTACT TCAAGAATTT 
    GAACAAATCA TGGAGAGTTA GTGTTTCTCA CTGCTCTAAC TATCATGTAT 
    TATCTACCTA CCACTTGTTG CTGCTTGTTT TACCTGTAAT AAGATATCAA 
    TATCATCCTG TTCCACTAAA ACTTATCCTT AATTATCTAT AAACTACAAT 
    ACAGCTGGTT CTGTATGTCA CTTCAAAAAC AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT1G09310.1 [+] show detail - Protein of unknown function, DUF538
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF538 5.1e-27
    Gene3D Protein of unknown function DUF538 2.2e-16

    See the detailed result >

    AT1G09310.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function, DUF538
    Computational Description
    Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT1G56580.1); Has 409 Blast hits to 409 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 403; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR