F07802

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07802

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07802

Determination of introduced cDNA(s)

  • RAFL19-70-D10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL19-70-D10 - Resource: pda11490

    full reading [+] show sequence

    Nucleotide sequence: RAFL19-70-D10 - full reading
    ATCGGAATCC CTAGAACACT CGATTTCAGC AAAATCAAAT CGGATTCAGT 
    GATCAAAAGT CAATTTGGTC GAGAAGAAAT TGAGCGTTGA AGATGACGGA
    GGCGATGATA GGAAATAAGC CAGGAATGGC GAGTGTGAAG GATATGCCGC
    TGCTTCAGGA TGGTCCGCCA CCGGGTGGGT TCGCACCGGT CCGATATGCC
    CGCCGGATAT CCAATACGGG TCCTAGTGCA ATGGCCATGT TCCTTGCCGT
    TTCTGGTGCC TTTGCTTGGG GAATGTACCA GGTCGGCCAG GGAAACAAAA
    TCCGCAGGTA AGAACGACTT GTAATAGCTC GTTCACATTT CAATTTTTCC
    TCTAAAATTC GAGATCGCCT TGGTAAAATT AGTGTTGTGG AGTGATTGAT
    GACCATAGTA ATGTAGTGAA GGATACATTT TGGTTAATAA TTGTTGAAAC
    TTGAGTATGT TTATCGTAGG AATTGGTTAA TATTATTAAC CTATGGAAAC
    ATAGGCTTGT TGAATCACTG TTATGTATTC TGTTATTAGT ATTCCCCGAC
    ATTTTGGTTG AAGCTTAATC AGCATGAGTT TAGCCTTAAA CGAATATAAA
    GTTCGTCAAC AATTTGTAAA CTCTTAAAGC CACAATTGCA AAGATGTGAG
    AATCTGTTAT GATGAAAGCA ATTATCTAGT TGCATGTTTT GATAGTAGTT
    ATCGGGATAC TGTTTCTATG TAGATAGATT GTTTTAGTAT TATATCTGGC
    TTGATCATTA ACTTCTTATG CATTTACAAT GGTCCTAAAC AAGTCTGATT
    TGATATCAGT AAGTATCAAG ATTAATGCTC TTATCAAGAT TGATGTGATG
    TTTAGGGCAT TGAAGGAAGA GAAATATGCT GCTCGTAGAA CAATACTTCC
    CATTCTTCAA GCAGAAGAAG ATGAAAGGTA AACCATATTC TCAAATTTAA
    GTCAATGTGC CTGCAGCAAC CTTCAGATAG CAATCTTGTT TCAATCCCCG
    TTTTGCATTC TAGGTTTGTG TCTGAGTGGA AAAAGTATCT GGAATATGAG
    GCTGATGTAA TGAAAGATGT TCCGGGATGG AAAGTTGGCG AGAATGTGTA
    CAATTCTGGT CGCTGGATGC CTCCGGCCAC TGGGGAACTC CGTCCTGATG
    TGTGGTGATT TCCTAGTTTC TCTCAAATGC ATATGATGAT GATGAATGAT
    GTTTCGCTGA GGATTGATAT GTTCTTGTTA TATCTTTTTT TCTTCGGGTA
    ATAAGAGAAT GATTCAACAG ACAGTATTCT TCTTGTATTG GTTTTCTCTT
    AAGTGTTTCA ATCGTAATAT GAGGCAAAAA CAGTTTCAT

    Gene models with high sequence identity

    1. AT1G04630.1 [+] show detail - GRIM-19 protein
      E-value: 0; Score: 99.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam GRIM-19 4.8e-17
    HMMPfam GRIM-19 2e-16
    HMMPanther GRIM-19 0.00000000097
    HMMPanther GRIM-19 1.4e-35

    See the detailed result >

    AT1G04630.1

    Model type
    Protein coding
    Short Description
    GRIM-19 protein
    Computational Description
    maternal effect embryo arrest 4 (MEE4); CONTAINS InterPro DOMAIN/s: GRIM-19 (InterPro:IPR009346); BEST Arabidopsis thaliana protein match is: GRIM-19 protein (TAIR:AT2G33220.1); Has 332 Blast hits to 332 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 162; Fungi - 83; Plants - 65; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR