F07821

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07821

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
  • abnormal (PATO:0000460)
    (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07821

Determination of introduced cDNA(s)

  • RAFL16-28-P10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-28-P10 - Resource: pdz88572

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL16-28-P10 - 5 prime EST 
    AACCGAGTGT CGGTGAATTT TTTGAAACTT CTTCTCTTTT GCGGTTTCGT 
    GTTCCACTCC TCTCTTCTTG GCCCACGTGT TCATCAATCT CTCCCTCCGC 
    ATGTAATCGC TTCGCCGTCA ATATCACATC TTTCTTCTTC TTTATCTTTA 
    AAATCTCTTT AGATCGATTC TTTTGTGGAT TCTTGAAATC TCCGGAGAAA 
    ACCACTATGG AGACGGCGAC TGAAGTGGCC ACGGTGGTGT CAACTCCGGC 
    GGTTACGGTT GCGGCGGTGG CGACGAGGAA GAGAGATAAG CCGTATAAAG 
    GGATAAGGAT GAGGAAGTGG GGGAAGTGGG TGGCGGAGAT AAGAGAGCCT 
    AATAAAAGGT CAAGGATCTG GCTTGGCTCT TACTCTACTC CTGAAGCGGC 
    GGCGCGTGCT TACGACACGG CGGTGTTTTA TCTCCGAGGT CCTTCTGCTC 
    GGCTTAACTT CCCGGAGCTT TTAGCCGGAG TGACGGTGAC GGGAGGAGGC 
    GGAGGAGGAG TGAACGGTGG TGGAGATATG TCGGCGGCGT ATATAAGGAG 
    AAAAGCGGCG GAGGTTGGAG CACAAGTGGA TGCNTTANAA GCGGCGGGGG 
    CNGGA

    Gene models with high sequence identity

    1. AT4G36900.1 [+] show detail - related to AP2 10
      E-value: 0; Score: 99.50

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL16-28-P10 - 3 prime EST 
    GCAAAATGTA AATCTCACAA GTTAAAAACA ATCTAAACAC TACCAAGTTT 
    TTACAGCTAC AAAACGTGTG AATAATCAAG CAACAGGAGG GATTGATTCA 
    GCGATTGCAA GCGGCTCAAG AACAGGAGAA GAGTGAGCTC GTGCGGGTGG 
    GCGAAAGAGA GAGAGAGAGA GAGAGAGAGA TGGAAAACGT TTCACTTGAG 
    GACTTTGAAG CTGAAAAAGC CAAGAAACAA CGAAGGGGAA GAACATAGCA 
    GCAAGTAAGA AGTTAATAAC AGGGCCGACC ATGCCAGATT CCTCGTGGCT 
    CTGTCTGAGT TAGAGATTGT CCCGCAGCTG CTTGTGAATG TGTAGAAGCA 
    GTGCTCTCCG GATTAGATTG TCCACCAGCC ACGTTTAGAG CCATTGCGCC 
    GGATATCTCA CATGTCATGT TTCCTTTGAT CTTAAACCAA GTCTCAGCAA 
    CACTT

    Gene models with high sequence identity

    1. AT5G59000.1 [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
      E-value: 0; Score: 97.99

    AT4G36900.1

    Model type
    Protein coding
    Short Description
    related to AP2 10
    Curator Summary
    encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.10). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.1.
    Computational Description
    related to AP2 10 (RAP2.10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DREB and EAR motif protein 3 (TAIR:AT2G23340.1); Has 5719 Blast hits to 5612 proteins in 252 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 5703; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT5G59000.1

    Model type
    Protein coding
    Short Description
    RING/FYVE/PHD zinc finger superfamily protein
    Computational Description
    RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G05830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR