F07838

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07838

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07838

Determination of introduced cDNA(s)

  • RAFL09-79-C06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-79-C06 - Resource: pda08811

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-79-C06 - full reading 
    GAGAGAAATC CATGGAGACG ATGACGATGA AGGTTGAAAC CATTAGTAAA 
    GAAATCATAA AGCCATCTTC GCCAACTCCA AATAATCTCC AAACTCTCCA 
    ACTCTCAATT TACGATCACA TCCTTCCTCC AGTTTACACA GTAGCCTTTC 
    TCTTCTACAC CAAAAATGAT TTGATCTCTC AAGAACACAC TTCCCACAAA 
    CTCAAGACTT CTCTGTCTGA AACCCTGACC AAGTTCTACC CTCTTGCCGG 
    AAGAATCACC GGAGTAACCG TCGATTGTAC CGATGAAGGA GCTATCTTTG 
    TCGATGCTCG TGTCAATAAC TGTCCTCTCA CTGAATTTCT CAAGTGCCCT 
    GATTTCGACG CCCTCCAACA GTTGCTTCCT CTAGATGTTG TAGACAACCC 
    ATACGTGGCT GCTGCCACGT GGCCTTTGCT GCTCGTGAAG GCAACTTACT 
    TCGGATGCGG AGGCATGGCC ATAGGAATCT GCATCACTCA CAAAATCGCG 
    GACGCAGCCT CCATCTCGAC TTTCATTCGG TCCTGGGCCG CCACGGCTCG 
    AGGAGAGAAC GATGCCGCTG CGATGGAAAG TCCTGTATTT GCTGGTGCGA 
    ATTTCTACCC ACCAGCCAAT GAGGCTTTTA AGCTACCTGC GGACGAACAA 
    GCCGGCAAGA GAAGCAGCAT TACAAAGAGA TTTGTGTTCG AAGCTTCTAA 
    GGTGGAAGAT CTCAGGACCA AAGCCGCTAG TGAAGAAACA GTAGACCAAC 
    CTACGCGGGT GGAGAGCGTT ACTGCGCTCA TCTGGAAATG CTTCGTCGCA 
    TCCTCAAAGA CAACTACTTG TGATCACAAA GTGCTGGTCC AGCTTGCTAA 
    CTTGCGGTCC AAGATACCTT CCCTTCTGCA AGAAAGCTCT ATCGGAAATC 
    TCATGTTCTC TTCTGTGGTC TTGAGTATTG GTCGAGGAGG GGAAGTTAAA 
    ATTGAAGAGG CCGTTAGAGA CTTACGAAAA AAAAAGGAGG AGTTAGGAAC 
    TGTGATCCTA GACGAGGGTG GGTCATCTGA CTCATCTTCC ATGATCGGTT 
    CGAAACTAGC AAATCTGATG CTCACCAACT ATTCTCGGTT GAGCTATGAG 
    ACTCATGAAC CCTATACCGT GAGTAGCTGG TGTAAGCTAC CTCTTTACGA 
    GGCTAGCTTT GGATGGGATT CTCCGGTTTG GGTTGTTGGG AATGTGTCCC 
    CCGTGTTAGG CAACTTGGCC ATGTTGATAG ATTCCAAGGA CGGACAAGGA 
    ATTGAAGCGT TCGTCACACT GCCTGAAGAG AACATGTCGT CCTTCGAGCA 
    GAACCCAGAG TTGCTCGCCT TTGCTACCAT GAACCCTAGT GTCTTGGTTT 
    AAATCCTGTA CTGAAATTTG TTGTTTCCTC AATAAAGATT TGGATACACC 
    GAATCTATAT ATATCTTCAA GATGTAATGC AAGAAATGTA AACTACTGGA 
    ATATCATTTA TGTTTTAACT TTTCC

    Gene models with high sequence identity

    1. AT4G15390.1 [+] show detail - HXXXD-type acyl-transferase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Transferase 1.1e-140
    Gene3D no description 2e-50
    Gene3D no description 2.2e-45

    See the detailed result >

    AT4G15390.1

    Model type
    Protein coding
    Short Description
    HXXXD-type acyl-transferase family protein
    Computational Description
    HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT3G30280.1); Has 2282 Blast hits to 2273 proteins in 132 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 35; Plants - 2239; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR