F08009

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08009

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08009

Determination of introduced cDNA(s)

  • RAFL09-72-L18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-72-L18 - Resource: pdz88299

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL09-72-L18 - 5 prime EST 
    GATTCTGAAT AAGATCAAGA ATTTACAGTA TTTGAAAAAA TACAAAATGG 
    CGAAAATCTA CCGGAAGTTG ACAGGCTACG GTGGTGAAGG AGGGCGTGAA 
    TGGGACGATG ATGTATATGA GGGTGTAAGA AAAGTGTATG TAGGACAAGA 
    TATCAATCGT ATCACTTACG TCAAATTCGA GTATGTGAAG GAAGACGGCC 
    AAGTCGTAAC AACTGAATAT GGGAAAATCA TTCAACAACC CAAAGAGTTT 
    GTACTTCAAT ATCCGGACGA ACATATCATA GCGGTGGAAG GAAACTATCG 
    CGGAGTGGCT CTATGTGCCA CAGAGGTGAT CACAAACCTC GTCTTCAAGA 
    CCTCAAAGGG TAGAAAGTCA CCACTGTTTG GTCCAAACTT GCTTGGAATT 
    ACGACCGGTA CAAAGTTCGT TATTGAGGAT GGAGGAAAGA AGATCGTAGG 
    GTTTCATGGA CGGTCGGGTA ATGCTCTCGA CGCGCTTGGA GTTTACTTTG 
    TACATGGCTC TCTAACAACG TCTTCCGCCT GTTTACAAGC TGGATGCCCA 
    AGGTGGTACA GACCGGGCGT GT

    Gene models with high sequence identity

    1. AT2G39330.1 [+] show detail - jacalin-related lectin 23
      E-value: 0; Score: 99.65

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL09-72-L18 - 3 prime EST 
    GATTTATTGA ATAGTTGAAG AGAGCACACC AATTCTTATT GGACATATTT 
    GACAGAAACA GTAAGTTACA AACACATCAA AAGTAGTAGA GTAAACACAC 
    CAATCCTTAT TGAATGTTTT CATTTAGTCG ACATGGCACT GGCTGGTTTT 
    ACTTATATAA TAAAAGGTTT TTCACTTGGT GTTGGTAATG GGCACGACAG 
    TGACTCGATG CTGTGAACAA CATCACTAGC TTGTCCGTGG AATCGACGAT 
    CTTGTGGCCT TTCTCTCCAA GCGAGAACTT CTCACCCGAA TCCATTCCGA 
    ATGGAGTTGA CTCCCTTTTG TCGTCTTAAA CTGAAGAAGA TAATCATTGG 
    TGTCTCGACT CCGAAAATCT TATCGTAATA GCCATCTATG GCCGTGAGAT 
    ATTC

    Gene models with high sequence identity

    1. AT2G39330.1 [+] show detail - jacalin-related lectin 23
      E-value: 0; Score: 99.02

    AT2G39330.1

    Model type
    Protein coding
    Short Description
    jacalin-related lectin 23
    Computational Description
    jacalin-related lectin 23 (JAL23); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin-related lectin 22 (TAIR:AT2G39310.3); Has 1977 Blast hits to 736 proteins in 44 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 4; Plants - 1953; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR