F08012

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08012

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08012

Determination of introduced cDNA(s)

  • RAFL09-49-K11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-49-K11 - Resource: pda06421

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-49-K11 - full reading
    ATTTGCAGAA GAAAAATAAA AAAAAAAAAC AGAGAAAAGG AGATATGGAA 
    TCAATCGGAG TCCTTATGAT GTGCCCCATG TCCTCCTACC TCGAGAACGA
    GCTTGAGAAG CGCTTCAACC TTCTTCGCTT CTGGACTTCT CCGGAGAAAT
    CCGTCCTCCT AGAAACTCAT CGGAACTCCA TCCGCGCCGT CGTTGGGAAT
    GCTTCTGCCG GCGCCGATGC TCAGCTCATC AGCGATCTGC CCAACCTTGA
    GATTGTATCC AGCTTCAGCG TCGGGCTCGA CAAGATCGAT TTGGGGAAAT
    GCAAAGAAAA AGGGATCCGC GTCACCAACA CCCCCGACGT TCTCACCGAA
    GACGTCGCAG ATCTCGCCAT CGGGCTTATC CTGGCTCTCC TTCGACGGCT
    GTGTGAGTGC GATCGCTATG TAAGGAGCGG AAAATGGAAG CAAGGTGAAT
    TCCAACTCAC TACCAAGTTT AGTGGAAAAT CCGTGGGGAT CATTGGTCTA
    GGTAGAATTG GGACTGCCAT CGCAAAGAGG GCTGAAGCCT TTAGCTGCCC
    AATCAATTAC TACTCAAGAA CCATTAAGCC TGATGTCGCC TACAAGTATT
    ATCCGACGGT GGTTGACCTT GCTCAAAACT CAGACATCCT CGTCGTCGCA
    TGCCCGTTGA CCGAGCAGAC CAGACACATT GTGGACCGGC AGGTCATGGA
    TGCATTAGGA GCTAAGGGCG TCCTCATAAA CATTGGCCGT GGACCACATG
    TTGATGAGCA AGAGCTTATT AAAGCTCTAA CAGAAGGCCG CCTAGGTGGG
    GCTGCCCTTG ATGTGTTTGA GCAGGAGCCT CACGTGCCCG AGGAGCTCTT
    TGGCCTTGAG AATGTAGTTC TCCTCCCTCA CGTTGGGAGT GGCACTGTGG
    AAACACGGAA TGCCATGGCC GATCTTGTCG TGGGTAACTT GGAAGCGCAC
    TTTTCTGGGA AATCACTTCT GACTCCGGTC GTCTGAGTCA TGTGACACAT
    TTGGGATTTG GTTTCACTTC ATTTGAAAGG TTTTTATGTT AACGAACTCA
    TGAAAAGGGT AATTTCTCTT CCAAAAGAAA GTTGCACTGT CGTATATAAG
    GAACGGATTT GAACACG

    Gene models with high sequence identity

    1. AT1G79870.1 [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther GLYCERATE DEHYDROGENASE 1.6e-202
    HMMPanther 2-HYDROXYACID DEHYDROGENASE 1.6e-202
    superfamily NAD(P)-binding domain 1.8e-57
    superfamily Formate/glycerate dehydrogenase catalytic dom 1.2e-31
    PatternScan D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 0
    Gene3D NAD(P)-binding domain 3.7e-56
    HMMPfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 1.3e-54
    HMMPfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 3.8e-26

    See the detailed result >

    AT1G79870.1

    Model type
    Protein coding
    Short Description
    D-isomer specific 2-hydroxyacid dehydrogenase family protein
    Computational Description
    D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 29704 Blast hits to 29696 proteins in 2729 species: Archae - 468; Bacteria - 18164; Metazoa - 733; Fungi - 1180; Plants - 594; Viruses - 5; Other Eukaryotes - 8560 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR