F08021

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08021

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08021

Determination of introduced cDNA(s)

  • RAFL06-86-D10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-86-D10 - Resource: pda03890

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-86-D10 - full reading 
    AACATAAGCC ATGGATTCTT TAAGAGGCCA AGGTGGGATT CAGATGCTTT 
    TAACTGCTGA ACAAGAAGCC GGACGGATTG TTTCAGCTGC GAGGACCGCA 
    AAACTAGCAA GAATGAAGCA AGCGAAAGAT GAGGCTGAGA AGGAGATGGA 
    AGAATACAGA TCCCGATTAG AAGAAGAGTA TCAAACTCAA GTTTCTGGGA 
    CGGATCAAGA AGCAGATGCA AAACGTTTAG ATGATGAGAC AGATGTCAGG 
    ATTACGAACC TTAAGGAATC TAGTTCAAAG GTCTCCAAGG ATATTGTCAA 
    GATGCTCATC AAGTATGTCA CCACTACTGC AGCATGATTC TCACTACACC 
    GCCCCCATCG TATCTTATTC TCCTGATAAT AAAACTGTTA TGATTCTTCA 
    AAAAAAATAA AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT4G25950.1 [+] show detail - vacuolar ATP synthase G3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam Vacuolar (H+)-ATPase G subunit 2.1e-29
    HMMTigr Vacuolar (H+)-ATPase G subunit 4.8e-10
    HMMPanther VACUOLAR ATP SYNTHASE SUBUNIT G PLANT 4.2e-57
    HMMPanther Vacuolar (H+)-ATPase G subunit 4.2e-57

    See the detailed result >

    AT4G25950.1

    Model type
    Protein coding
    Short Description
    vacuolar ATP synthase G3
    Curator Summary
    V-ATPase G-subunit like protein
    Computational Description
    vacuolar ATP synthase G3 (VATG3); FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; INVOLVED IN: proton transport; LOCATED IN: vacuole; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Vacuolar (H+)-ATPase G subunit (InterPro:IPR005124); BEST Arabidopsis thaliana protein match is: vacuolar membrane ATPase 10 (TAIR:AT3G01390.2); Has 543 Blast hits to 543 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 119; Plants - 123; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR