F08039

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08039

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08039

Determination of introduced cDNA(s)

  • RAFL09-37-B08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-37-B08 - Resource: pda08259

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-37-B08 - full reading 
    AAAACCTCAA CGAACTCCTT CCATGGCAGC AGGACTATCA ACAATCGCCG 
    TAACACTCAA ACCACTCAAC CGCTCTTCTT TCTCCGCAAA CCACCCTATA 
    TCCACCGCAG TTTTCCCTCC ATCTCTAAGA TTCAACGGCT TCCGACGTCG 
    AAAGATTCTC ACCGTTTGTT TCGTCGTGGA AGAACGGAAA CAAAGCTCTC 
    CCATGGACGA TGACAACAAA CCAGAAAGCA CGACAAGCTC TTCTGAGATC 
    TTGATGACGT CGCGGCTTCT CAAGAAAGCG GAGAAGAAGA AATCAGAGAG 
    GTTCACTTAT TTAATAGCAG CTGTGATGTC GAGCTTTGGT ATCACTTCTA 
    TGGCTATAAT GGCTGTTTAT TACCGATTTT CTTGGCAAAT GAAGGGAGGT 
    GAAGTGTCTG TGTTAGAGAT GTTTGGTACA TTTGCTCTTT CCGTTGGTGC 
    TGCCGTTGGG ATGGAGTTTT GGGCAAGATG GGCTCATAGA GCTCTTTGGC 
    ATGATTCTTT ATGGAACATG CATGAGTCAC ATCACAAACC AAGAGAAGGA 
    GCGTTTGAGT TAAACGATGT GTTTGCTATA ACAAACGCGG TTCCTGCGAT 
    TGGTCTACTC TATTATGGAT TCTTGAATAA AGGACTTGTT CCTGGTCTCT 
    GCTTCGGTGC CGGACTGGGA ATAACGATGT TTGGAATGGC TTACATGTTC 
    GTTCACGATG GACTTGTGCA CAAGAGATTC CCTGTAGGTC CCATTGCCAA 
    CGTTCCTTAC CTTCGAAAGG TCGCCGCCGC TCACCAGCTA CACCACACAG 
    ACAAATTCAA AGGTGTACCA TATGGGCTGT TTCTTGGACC AAAGGAAGTA 
    GAAGAAGTGG GAGGAAAAGA AGAGTTGGAG AAAGAGATAA GCCGGAGAAT 
    CAAATTATAC AACAAGGGTT CTTCTACCTC TTAATTGCTA CAAACCCAAT 
    TTTACTTCTT TGATGTTTTT GTAATACATT TTGGGACTAG TCTTTCTTTT 
    AGTATATATA AAAAATGACG TAGAAGAAAG AGTCAGGCTA ATAAAGATTT 
    AGAAAAACAT AAAGAAACAA AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT5G52570.1 [+] show detail - beta-carotene hydroxylase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G52570.1

    Model type
    Protein coding
    Short Description
    beta-carotene hydroxylase 2
    Curator Summary
    Converts β-carotene to zeaxanthin via cryptoxanthin.
    Computational Description
    beta-carotene hydroxylase 2 (BETA-OHASE 2); FUNCTIONS IN: carotene beta-ring hydroxylase activity; INVOLVED IN: xanthophyll biosynthetic process, carotene metabolic process; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: beta-hydroxylase 1 (TAIR:AT4G25700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR