F08042

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08042

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08042

Determination of introduced cDNA(s)

  • RAFL09-22-J23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-22-J23 - Resource: pda05647

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-22-J23 - full reading 
    AAATGAAAAT CGCTGGGCTC TCGCTGTCAA CGCTGGGCGT GAGTGAGATC 
    TAACAATCGG TAGCGAATTT TGTAAATTTT GTTCCGGTTT TGAAGTCTCA 
    ATCTCGGGGT TCCGGTTTTA GCAACTACTT CTTCTGACAT TTCAGCTGTT 
    CTAGTTGATC TTTATATACT TTATATGATC TGGGATTTTG AAGAGTTTTT 
    AGGGAGGAAC CAAAATTTCT GAGAGAGAAA AATGAAGTTA TCGAGCTGCG 
    TTTTGATCTT CCTTCTATGT AACACATTCT CCTCGATTTC TGCTTTCCGT 
    CTGAGTCGGA GTCAACCAAC TGAGCGAATT TCAGGTAGTG CTGGTGATGT 
    GTTGGAAGAT GATCCCGTGG GAAGACTGAA AGTCTTTGTT TATGAGCTTC 
    CAAGTAAATA CAACAAGAAG ATACTTCAGA AGGATCCGAG ATGTCTAAAC 
    CACATGTTTG CTGCTGAGAT ATATATGCAA CGGTTTCTTT TATCTAGCCC 
    AGTTCGAACA CTTAATCCCG AGGAAGCTGA TTGGTTCTAC GTACCTGTGT 
    ACACCACTTG TGATCTCACG CCTAATGGGC TTCCTCTTCC TTTTAAATCT 
    CCACGAATGA TGAGAAGTGC CATTCAGCTT ATTGCTTCCA ATTGGCCATA 
    CTGGAATCGC ACAGAAGGAG CAGACCACTT CTTTGTTGTG CCTCATGACT 
    TTGGAGCCTG TTTCCATTAT CAAGAAGAGA AGGCAATAGG AAGAGGAATA 
    CTACCCTTGC TTCAACGAGC TACACTGGTG CAGACATTTG GACAAAGGAA 
    TCATGTTTGC TTGAAAGAAG GTTCAATCAC TGTTCCTCCA TATGCTCCAC 
    CACAGAAGAT GCAGTCACAC TTAATTCCCG AAAAAACTCC TCGATCCATC 
    TTCGTTTATT TCAGAGGATT GTTTTATGAT GTGGGAAATG ACCCTGAGGG 
    TGGTTATTAT GCGAGGGGTG CAAGAGCAGC TGTATGGGAA AACTTCAAAG 
    ACAATCCGCT GTTTGACATC TCAACAGAGC ACCCAACAAC ATATTATGAG 
    GACATGCAGA GAGCAATCTT CTGCCTATGC CCACTTGGAT GGGCCCCATG 
    GAGTCCAAGA CTGGTGGAAG CAGTGATATT CGGTTGCATC CCTGTGATCA 
    TAGCAGACGA CATCGTGTTA CCTTTTGCAG ATGCAATCCC TTGGGAAGAT 
    ATTGGTGTGT TTGTGGATGA GAAAGATGTC CCTTACCTGG ACACAATACT 
    CACATCGATC CCACCAGAGG TTATACTGAG AAAACAGAGG TTGTTGGCAA 
    ACCCGTCGAT GAAACAAGCC ATGCTGTTCC CGCAACCGGC TCAACCAGGG 
    GATGCGTTTC ATCAAGTATT GAATGGGTTG GCTCGTAAGC TGCCTCATGA 
    GAGGAGTGTG TATCTGAGAC CAGGTGAGAA GCTGTTGAAC TGGACGGCAG 
    GACCGGTCGC TGATCTGAAA CCTTGGTAAG GACCAGTGTT GGAATTTGAT 
    TGAATGAGCT ATTGTTTGGT TGGTTTCTGT CTTCTCGTGT CTGTATTTTG 
    TAGAATCATA ACTTTTTTTT GCTATGTAGA AGGGAAAAAG CTTTGTCATT 
    GTAATGTAAC TAGAATCCTT TTGACATCTC ACGAGAAAGA CAAGTAAAAG 
    AAAAATTATT GTTG

    Gene models with high sequence identity

    1. AT5G61840.1 [+] show detail - Exostosin family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther EXOSTOSIN-RELATED 3.4e-152
    HMMPanther EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERAS 3.4e-152
    HMMPfam Exostosin-like 3.5e-73

    See the detailed result >

    AT5G61840.1

    Model type
    Protein coding
    Short Description
    Exostosin family protein
    Computational Description
    GUT1; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT1G27440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR