F08106

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08106

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08106

Determination of introduced cDNA(s)

  • RAFL09-35-N14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-35-N14 - Resource: pda06121

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-35-N14 - full reading 
    GAGATAATAA AGAGAGAAGC AAAAAAGAAT TTTTATAGAA AGAAAGGAAA 
    AATCAGAAAA GGAGAGAAAA ATTAAAAAAG TCTCTCTTTT CTCTTTTTCT 
    TCTTCGTCTC CCATATTCTC CGATCAAAAA TATATTTCTC TCTCACTTTC 
    CTTGGTTTTC TCGGCGGCTT CTTCTTCTCC TATTTCTCCC TCAAATCGTT 
    TTCTCCAGTT TTCTTGGGAT AAATCTTCCT CCTTTCTGCA GACGCCATGT 
    CGGACAAAGG TCGTCCCTTG CCAAAATTTG GTGAATGGGA TGTGAATGAT 
    CCAGCATCAG CAGAAGGTTT TACAGTGATA TTCAACAAAG CTAGGGATGA 
    GAAAAAGACC GGTGGCAAAC CGGGATCACC CGGTAAATCC AGTGAGGGTC 
    ATGTTAAATC TGGAGGAGGA GATCCTAGTA AACCTCAGCC TAAAAAATGG 
    CTCTGCTGCA TGCAAGCTCC AGCTGTGGAC TCTTGACAGA CACAAAGATG 
    GATTTGCTTG CTGCTAAAAA AAAAGTCACA GTGCTTACAC ATCTAAAAGC 
    AATGGTTCTT TTTATGTTTT ATTGTCGTCT TTCTTGAAAT TACCCACACA 
    CACAAAAAAA AAAGGTTCCT AAGATGATTT GGAGCTCACC CACCTTTAGT 
    ATCACGATTA TGATTCCTTC TTCTTTGAAG TTGTTTCTTC TTCTTAAAAT 
    GCTGTAAAAT CGTGTCTCCA TTTTATTGGA AAAAAAAAAG GAAGAAAAAC 
    GAAAAAAAAC ACAGTTACTG TGTCTATATG GAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT5G55850.1 [+] show detail - RPM1-interacting protein 4 (RIN4) family protein
      E-value: 0; Score: 99.49

     

    InterPro Scan Digest

    See the detailed result >

    AT5G55850.1

    Model type
    Protein coding
    Short Description
    RPM1-interacting protein 4 (RIN4) family protein
    Curator Summary
    NOI protein
    Computational Description
    NOI; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to nitrate; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT2G04410.1); Has 284 Blast hits to 283 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR