F08110

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08110

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08110

Determination of introduced cDNA(s)

  • RAFL09-85-D20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-85-D20 - Resource: pda08935

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-85-D20 - full reading 
    GGTAATCAAA CTATTAGTTA AAAAAAAATT GAACATATTA AGAAGATTAC 
    AGAATAATAC ATGTAATCCT CCACTTGTCA GTTCTATAAA ATATTAATTA 
    AAAAGGAAAT TCAAATTGAA GTAACTAAGA ACAGTTTTTT TAGCAGTTAA 
    GCTGAATTTC AAAAAGCCAT AATCTTCGCT CTGAATCTCA TCAGCCCCGG 
    TCTCCTTCTC TAGCTATATA TATACGTGTG TGATAAAGTC GTACCCTCAA 
    GCCAACACAA TAACAAGAAT GGCTTCTCCT TTCTTCTTTG TGTTCCTTCT 
    CTCTGCGCTT TCACTGGAGA ATACCTATGC AAGTCCCAAT TACAGAGAAG 
    CACTCTCAAA GTCATTACTC TTTTTCCAAG GTCAGCGGTC TGGTCGCCTC 
    CCTAGTGACC AACAACTCTC ATGGAGGTCT AGCTCTGGCC TCTCTGATGG 
    CTCATCTGCT CACGTAAGAC CCTAAAACTG TATACCCATA GTCAAGTAGT 
    AAAAGCATAG TAAATCCATC TGAATAACAC GGTATGAGTT GCAGGTGGAC 
    TTGACCGGAG GCTACTATGA TGCTGGGGAC AATGTGAAGT TCAATTTCCC 
    GATGGCGTTC ACCACAACCA TGCTTTCCTG GAGCTCTTTG GAGTACGGTA 
    AGAAGATGGG ACCCGAGCTC CAGAACTCCC GTGTGGCCAT CCGTTGGGCC 
    ACGGATTATC TACTGAAATG TGCCAGGGCT ACACCAGGGA AGCTTTACGT 
    TGGAGTAGGA GATCCTAATG GTGACCACAA GTGCTGGGAA CGACCAGAAG 
    ATATGGACAC TCCTCGCACA GTCTACTCTG TATCTCCCTC AAACCCTGGC 
    TCTGATGTAG CCGCTGAAAC CGCTGCTGCT CTAGCTGCAA GCTCCATGGT 
    TTTCAGGAAA GTAGATCCCA AGTACTCTCG CTTGCTCTTG GCGACAGCAA 
    AGAAGGTCAT GCAGTTTGCC ATTCAATACC GAGGCGCTTA CAGTAATTCC 
    CTTTCCTCTT CCGTCTGTCC GTTCTACTGC TCCTACTCTG GCTACAAGGT 
    AGAGATTCAT ATGTTTACAT TGTTCCAAAA CTGAGAAAGA CATATCAATG 
    AATCGTTGAA AACTTAACTA CTCTTATGAT ATCAGGACGA GCTACTATGG 
    GGAGCAGCAT GGCTACATAG AGCAACCAAC GACCCGTATT ACACAAACTT 
    CATAAAATCC TTAGGAGGAG GAGATCAGCC TGACATCTTC AGTTGGGACA 
    ATAAATACGC CGGTGCCTAT GTTCTTCTCT CACGAGTATG TCTCAATCCT 
    TAAAATTCCT AGACATAACT TAACCATTTC CTTCAATGAT TTACAAACAC 
    ATTTCTTTCG CAGCGAGCAG TACTAAACAA AGACAACAAC TTTGAACTCT 
    ACAAGCAAGC AGCTGAGAAT TTCATGTGTA AGATCCTTCC AAATTCTCCA 
    TCCTCGTCAA CAAAGTACAC TAAAGGTAAA CTCAACACAG AGTTCTCTCC 
    AAAAGCATTT CAATTACTCA AATACTAAAA GCTATAACTT TCAGGTGGAC 
    TGATGTACAA ACTACCTCAG AGCAATCTAC AATACGTGAC ATCAATAACA 
    TTCTTGCTCA CCACCTACGC CAAATATATG AAATCCACAA AACAAACTTT 
    CAACTGCGGA AACTCACTAA TCGTCCCCAA CGCACTGATA AATCTATCGA 
    AGCGACAAGT CGATTACGTC CTCGGTGTGA ATCCAATGAA GATGTCGTAC 
    ATGGTTGGAT TCAGCTCCAA TTTCCCCAAA AGAATCCATC ACAGAGGTTC 
    CTCTCTCCCG AGCCGAGCCG TCCGTTCCAA TTCTCTGGGC TGTAACGGCG 
    GATTCCAATC ATTCAGAACA CAAAACCCTA ACCCTAACAT ATTAACCGGA 
    GCAATTGTCG GAGGACCGAA TCAAAACGAT GAGTATCCAG ACCAGAGAGA 
    CGATTACACC CGATCAGAGC CAGCTACATA CATCAACGCC GCATTCGTCG 
    GACCATTGGC GTATTTCGCC GCCAGCCGAT CGCCGTAAAT CGCCACTCAC 
    TTTAAAGTT

    Gene models with high sequence identity

    1. AT1G22880.2 [+] show detail - cellulase 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Six-hairpin glycosidase-like 3.2e-11
    superfamily Six-hairpin glycosidase-like 5.3e-62
    superfamily Six-hairpin glycosidase-like 2.6e-11
    superfamily Six-hairpin glycosidase-like 9.3e-42
    PatternScan Glycoside hydrolase, family 9, active site 0
    HMMPfam Glycoside hydrolase, family 9 1e-11
    HMMPfam Glycoside hydrolase, family 9 5e-69
    HMMPfam Glycoside hydrolase, family 9 7.5e-13
    HMMPfam Glycoside hydrolase, family 9 5.4e-45
    Gene3D Six-hairpin glycosidase 5.3e-08
    Gene3D Six-hairpin glycosidase 3.3e-57
    Gene3D Six-hairpin glycosidase 1.5e-07
    Gene3D Six-hairpin glycosidase 2.3e-37
    HMMPanther Glycoside hydrolase, family 9 4.2e-84
    HMMPanther ENDO-1,4-BETA-GLUCANASE 4.2e-84
    HMMPanther Glycoside hydrolase, family 9 7.4e-102
    HMMPanther ENDO-1,4-BETA-GLUCANASE 7.4e-102
    HMMPanther Glycoside hydrolase, family 9 1.2e-07
    HMMPanther ENDO-1,4-BETA-GLUCANASE 1.2e-07
    HMMPanther Glycoside hydrolase, family 9 2.3e-23
    HMMPanther ENDO-1,4-BETA-GLUCANASE 2.3e-23

    See the detailed result >

    AT1G22880.2

    Model type
    Protein coding
    Short Description
    cellulase 5
    Computational Description
    cellulase 5 (CEL5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 3 (TAIR:AT1G71380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR