F08110

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08110

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08110

Determination of introduced cDNA(s)

  • RAFL09-85-D20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-85-D20 - Resource: pda08935

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-85-D20 - full reading
    GGTAATCAAA CTATTAGTTA AAAAAAAATT GAACATATTA AGAAGATTAC 
    AGAATAATAC ATGTAATCCT CCACTTGTCA GTTCTATAAA ATATTAATTA
    AAAAGGAAAT TCAAATTGAA GTAACTAAGA ACAGTTTTTT TAGCAGTTAA
    GCTGAATTTC AAAAAGCCAT AATCTTCGCT CTGAATCTCA TCAGCCCCGG
    TCTCCTTCTC TAGCTATATA TATACGTGTG TGATAAAGTC GTACCCTCAA
    GCCAACACAA TAACAAGAAT GGCTTCTCCT TTCTTCTTTG TGTTCCTTCT
    CTCTGCGCTT TCACTGGAGA ATACCTATGC AAGTCCCAAT TACAGAGAAG
    CACTCTCAAA GTCATTACTC TTTTTCCAAG GTCAGCGGTC TGGTCGCCTC
    CCTAGTGACC AACAACTCTC ATGGAGGTCT AGCTCTGGCC TCTCTGATGG
    CTCATCTGCT CACGTAAGAC CCTAAAACTG TATACCCATA GTCAAGTAGT
    AAAAGCATAG TAAATCCATC TGAATAACAC GGTATGAGTT GCAGGTGGAC
    TTGACCGGAG GCTACTATGA TGCTGGGGAC AATGTGAAGT TCAATTTCCC
    GATGGCGTTC ACCACAACCA TGCTTTCCTG GAGCTCTTTG GAGTACGGTA
    AGAAGATGGG ACCCGAGCTC CAGAACTCCC GTGTGGCCAT CCGTTGGGCC
    ACGGATTATC TACTGAAATG TGCCAGGGCT ACACCAGGGA AGCTTTACGT
    TGGAGTAGGA GATCCTAATG GTGACCACAA GTGCTGGGAA CGACCAGAAG
    ATATGGACAC TCCTCGCACA GTCTACTCTG TATCTCCCTC AAACCCTGGC
    TCTGATGTAG CCGCTGAAAC CGCTGCTGCT CTAGCTGCAA GCTCCATGGT
    TTTCAGGAAA GTAGATCCCA AGTACTCTCG CTTGCTCTTG GCGACAGCAA
    AGAAGGTCAT GCAGTTTGCC ATTCAATACC GAGGCGCTTA CAGTAATTCC
    CTTTCCTCTT CCGTCTGTCC GTTCTACTGC TCCTACTCTG GCTACAAGGT
    AGAGATTCAT ATGTTTACAT TGTTCCAAAA CTGAGAAAGA CATATCAATG
    AATCGTTGAA AACTTAACTA CTCTTATGAT ATCAGGACGA GCTACTATGG
    GGAGCAGCAT GGCTACATAG AGCAACCAAC GACCCGTATT ACACAAACTT
    CATAAAATCC TTAGGAGGAG GAGATCAGCC TGACATCTTC AGTTGGGACA
    ATAAATACGC CGGTGCCTAT GTTCTTCTCT CACGAGTATG TCTCAATCCT
    TAAAATTCCT AGACATAACT TAACCATTTC CTTCAATGAT TTACAAACAC
    ATTTCTTTCG CAGCGAGCAG TACTAAACAA AGACAACAAC TTTGAACTCT
    ACAAGCAAGC AGCTGAGAAT TTCATGTGTA AGATCCTTCC AAATTCTCCA
    TCCTCGTCAA CAAAGTACAC TAAAGGTAAA CTCAACACAG AGTTCTCTCC
    AAAAGCATTT CAATTACTCA AATACTAAAA GCTATAACTT TCAGGTGGAC
    TGATGTACAA ACTACCTCAG AGCAATCTAC AATACGTGAC ATCAATAACA
    TTCTTGCTCA CCACCTACGC CAAATATATG AAATCCACAA AACAAACTTT
    CAACTGCGGA AACTCACTAA TCGTCCCCAA CGCACTGATA AATCTATCGA
    AGCGACAAGT CGATTACGTC CTCGGTGTGA ATCCAATGAA GATGTCGTAC
    ATGGTTGGAT TCAGCTCCAA TTTCCCCAAA AGAATCCATC ACAGAGGTTC
    CTCTCTCCCG AGCCGAGCCG TCCGTTCCAA TTCTCTGGGC TGTAACGGCG
    GATTCCAATC ATTCAGAACA CAAAACCCTA ACCCTAACAT ATTAACCGGA
    GCAATTGTCG GAGGACCGAA TCAAAACGAT GAGTATCCAG ACCAGAGAGA
    CGATTACACC CGATCAGAGC CAGCTACATA CATCAACGCC GCATTCGTCG
    GACCATTGGC GTATTTCGCC GCCAGCCGAT CGCCGTAAAT CGCCACTCAC
    TTTAAAGTT

    Gene models with high sequence identity

    1. AT1G22880.2 [+] show detail - cellulase 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Six-hairpin glycosidase-like 0.000000000032
    superfamily Six-hairpin glycosidase-like 5.3e-62
    superfamily Six-hairpin glycosidase-like 0.000000000026
    superfamily Six-hairpin glycosidase-like 9.3e-42
    PatternScan Glycoside hydrolase, family 9, active site 0
    HMMPfam Glycoside hydrolase, family 9 0.00000000001
    HMMPfam Glycoside hydrolase, family 9 5e-69
    HMMPfam Glycoside hydrolase, family 9 0.00000000000075
    HMMPfam Glycoside hydrolase, family 9 5.4e-45
    Gene3D Six-hairpin glycosidase 0.000000053
    Gene3D Six-hairpin glycosidase 3.3e-57
    Gene3D Six-hairpin glycosidase 0.00000015
    Gene3D Six-hairpin glycosidase 2.3e-37
    HMMPanther Glycoside hydrolase, family 9 4.2e-84
    HMMPanther ENDO-1,4-BETA-GLUCANASE 4.2e-84
    HMMPanther Glycoside hydrolase, family 9 7.4e-102
    HMMPanther ENDO-1,4-BETA-GLUCANASE 7.4e-102
    HMMPanther Glycoside hydrolase, family 9 0.00000012
    HMMPanther ENDO-1,4-BETA-GLUCANASE 0.00000012
    HMMPanther Glycoside hydrolase, family 9 2.3e-23
    HMMPanther ENDO-1,4-BETA-GLUCANASE 2.3e-23

    See the detailed result >

    AT1G22880.2

    Model type
    Protein coding
    Short Description
    cellulase 5
    Computational Description
    cellulase 5 (CEL5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 3 (TAIR:AT1G71380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR