F08121

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08121

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08121

Determination of introduced cDNA(s)

  • RAFL07-12-I18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-12-I18 - Resource: pda17312

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-12-I18 - full reading 
    AGAGAGAAGC TTTCTCTTCT ATTTTCTCTC TCTCAGTTAA CCAGAGAGAG 
    CATCAATGGC TTCTACTTCT TCTCTAGCGC TCTCACAAGC TCTCCTTACA 
    CGAGCCATCT CTCACAATGG CTCTGAAAAC TGCGTCTCTA TACCAGCTTT 
    CTCTGCTCTC AAATCCACTT CTCCACGCAC CAGTGGCACC ATCTCTTCCC 
    GTCGACGAAA CGCCTCCACG ATCAGTCACT CTCTCCGCCC TCTGGTTCGT 
    GCAGCCGCCG TAGAGGCAAT CGTGACAAGT TCTGATTCGT CCCTGGTTGA 
    TAAGTCGGTG AACACGATCA GGTTTCTGGC AATAGATGCG GTTGAGAAGG 
    CGAAATCAGG TCATCCAGGT CTTCCTATGG GCTGTGCTCC GATGTCTCAC 
    ATTTTGTACG ATGAAGTCAT GAAGTATAAC CCCAAGAATC CTTACTGGTT 
    TAACCGTGAT CGTTTCGTTC TCTCTGCTGG ACATGGATGC ATGTTGCAAT 
    ACGCTCTGCT TCACCTTGCT GGCTACGACA GCGTTAGGGA GGAAGATTTG 
    AAGAGCTTCC GTCAATGGGG AAGTAAGACT CCAGGACATC CTGAGAATTT 
    TGAGACTCCT GGTGTTGAAG CCACTACTGG TCCTCTTGGA CAAGGTATTG 
    CAAATGCTGT TGGTTTAGCT CTTGCGGAGA AGCATTTGGC TGCTAGATTT 
    AACAAACCTG ACAATGAGAT TGTTGACCAC TACACGTATT CGATTCTTGG 
    AGATGGTTGT CAGATGGAAG GGATTTCAAA TGAAGTTTGC TCTCTAGCTG 
    GTCACTGGGG ACTTGGAAAG CTAATCGCTT TCTACGATGA CAATCACATT 
    TCCATTGATG GAGACACAGA TATTGCTTTT ACCGAGAGCG TGGACAAACG 
    CTTTGAAGCT CTTGGATGGC ATGTTATCTG GGTAAAGAAT GGAAACAATG 
    GTTATGATGA GATCCGTGCT GCCATTAGGG AAGCTAAGGC TGTAACAGAC 
    AAGCCCACTT TGATTAAGGT CACTACTACA ATTGGTTATG GTTCTCCCAA 
    CAAGGCAAAC TCATACAGTG TCCATGGAGC TGCGCTTGGT GAGAAGGAAG 
    TTGAGGCTAC CCGAAACAAT CTTGGGTGGC CATATGAGCC GTTCCATGTA 
    CCTGAGGATG TCAAAAGCCA TTGGAGCCGT CACACGCCCG AAGGGGCTGC 
    TCTTGAAGCT GATTGGAATG CCAAATTTGC AGCTTATGAG AAGAAATATC 
    CGGAGGAAGC TGCAGAGTTG AAATCTATTA TCTCAGGTGA ATTGCCCGTT 
    GGTTGGGAGA AGGCACTTCC TACATATACA CCAGACTCTC CGGGTGATGC 
    CACCAGAAAC CTGTCTCAGC AATGTCTTAA CGCACTTGCG AAAGCTGTGC 
    CTGGTTTTCT TGGTGGGAGT GCTGACCTTG CATCTTCCAA CATGACAATG 
    CTTAAAGCAT TCGGCAACTT CCAAAAAGCC ACACCTGAAG AAAGAAACCT 
    TAGATTTGGT GTCAGGGAAC ATGGTATGGG AGCTATCTGC AACGGCATTG 
    CCCTTCACAG CCCCGGTTTT ATCCCTTACT GCGCAACTTT CTTTGTGTTT 
    ACTGACTATA TGAGAGCTGC AATGAGAATC TCGGCTTTGT CTGAAGCTGG 
    TGTTATATAC GTTATGACCC ATGACTCCAT TGGTCTTGGA GAAGATGGAC 
    CAACCCACCA ACCCATCGAA CACTTATCCA GTTTCCGTGC CATGCCCAAT 
    ATTATGATGT TCCGTCCAGC TGATGGGAAC GAAACAGCCG GTGCATACAA 
    AATCGCTGTC ACAAAACGTA AGACACCTTC TGTCTTAGCC TTATCTAGAC 
    AAAAGCTGCC TCAACTTCCA GGAACATCTA TTGAGAGCGT CGAGAAAGGT 
    GGATACACCA TTTCTGACAA CTCAACCGGT AACAAACCCG ATGTGATCTT 
    GATCGGAACT GGATCAGAGC TAGAGATTGC TGCTCAAGCT GCAGAGAAGT 
    TAGGGAACAA GGCAAAAGTG TGAGAGTTGT TTCCTTTGTA TGTTGGGAGC 
    TTTTCGACGA GCAATCAGAT GCATACAAGG AAAGTGTTTT GCCATCTGAT 
    GTATCAGCTA GAGTTAGTAT CGAAGCTGGA TCGACTTTTG GATGGGGAAA 
    GATCGTCGGA GGAAAAGGGA AATCGATTGG AATTGATACG TTTGGAGCAA 
    GTGCACCAGC AGGAAAGCTT TATAAAGAGT TTGGTATCAC CATTGAAGCT 
    ATGGTTGAAG CAGCCAAGTC ACTTATTTAA AAAAGTATCT TACAGGTACT 
    ACCGAGGTTT GCATTTGAAG TAAGAGACAT TCCATAAGCA TTATCTTCTT 
    TGTCCAAATA AAAATATACT CCTTCCAATC TTTTTATAAA TGATGTTTAA 
    AGCTTTCATT TTGGTTTTTA AATAAATGAT GTTTTAAATT TTCAATGCAA 
    AATTATTTTT ATTGGTTGAT TAAAAAAAAA A

    Gene models with high sequence identity

    1. AT2G45290.1 [+] show detail - Transketolase
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II 5.4e-28
    superfamily Thiamin diphosphate-binding fold (THDP-bindin 4.4e-118
    superfamily Thiamin diphosphate-binding fold (THDP-bindin 1.8e-67
    superfamily Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II 5.6e-10
    HMMPfam Transketolase, N-terminal 2.6e-150
    HMMPfam Transketolase-like, pyrimidine-binding domain 3.3e-43
    HMMPanther Transketolase, bacterial-like 4.7e-40
    HMMPanther DEHYDROGENASE RELATED 4.7e-40
    HMMPanther Transketolase, bacterial-like 0
    HMMPanther DEHYDROGENASE RELATED 0
    HMMTigr Transketolase, bacterial-like 0
    HMMSmart Transketolase-like, pyrimidine-binding domain 1e-59
    Gene3D Transketolase-like, C-terminal 4.3e-25
    Gene3D no description 9.8e-133
    Gene3D no description 6.9e-68
    Gene3D Transketolase-like, C-terminal 1.3e-05
    PatternScan Transketolase, N-terminal 0
    PatternScan Transketolase binding site 0

    See the detailed result >

    AT2G45290.1

    Model type
    Protein coding
    Short Description
    Transketolase
    Computational Description
    Transketolase; FUNCTIONS IN: catalytic activity, transketolase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, bacterial-like (InterPro:IPR005478), Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475), Transketolase binding site (InterPro:IPR020826); BEST Arabidopsis thaliana protein match is: Transketolase (TAIR:AT3G60750.1); Has 19460 Blast hits to 19400 proteins in 2776 species: Archae - 200; Bacteria - 11520; Metazoa - 310; Fungi - 312; Plants - 211; Viruses - 0; Other Eukaryotes - 6907 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR