F08130

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08130

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Seed::deep blue

Original: F08130

Determination of introduced cDNA(s)

RAFL06-09-F16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-09-F16 - Resource: pda02936

full reading [+] show sequence

ACAAACCGCA AACGCGACAG AACTAACTAA CGACGCCGGA GATGGCCGCC 
ACTTCAACCG CCGCTGCTGC TTCTTCAATC ATGGGTACCC GGGTGGTTTC 
CGACATTAGC TCCAATTCAA GCCGGTTCAC AGCCCGGTTC GGATTCGGAA 
CCAAGAAAGC ATCTCCCAAA AAGGCTAAGA CGGTTATCTC AGACCGGCCT 
CTATGGTTCC CAGGCGCAAA ATCACCCGAA TATCTCGACG GTTCACTTGT 
CGGGGACTAC GGGTTCGATC CTTTTGGTTT AGGCAAACCG GCGGAGTATC 
TCCAATTCGA TTTGGATTCC TTGGACCAGA ACTTAGCCAA GAACTTATAC 
GGAGAAGTGA TCGGGACTCG TACCGAGGCG GTGGACCCCA AATCGACGCC 
GTTTCAGCCA TATAGTGAAG TCTTCGGGCT ACAAAGATTC AGAGAATGTG 
AGCTGATTCA CGGTCGGTGG GCAATGCTCG CCACTCTTGG CGCTATCACC 
GTCGAATGGC TCACCGGTGT TACTTGGCAA GACGCCGGCA AGGTAGAGCT 
AGTGGATGGA TCATCTTACT TAGGACAGCC ATTGCCGTTC TCTATCTCGA 
CATTGATATG GATCGAAGTG TTAGTGATCG GCTACATTGA GTTCCAACGA 
AACGCTGAAC TGGACTCGGA GAAGCGTTTG TATCCAGGAG GCAAGTTCTT 
TGACCCGTTA GGACTAGCGT CTGACCCGGT GAAGAAGGCT CAGCTTCAGC 
TAGCTGAGAT CAAACATGCT CGTTTAGCCA TGGTTGGATT CTTGGGTTTT 
GCGGTTCAGG CGGCTGCAAC CGGTAAAGGA CCGCTCAACA ACTGGGCGAC 
TCACCTTAGT GACCCACTTC ACACCACCAT TATCGATACC TTCTCTTCCT 
CCTGATGTGG TGGCTTTTAG CTTCTACTGG TGTCATGTAA TGATGTGGTG 
GCTTTTAGCT TCTACTGGTG TCATGTAATG ATGTAACGTC GTTATTTTAA 
AGAAAATTTG GCACCTTTTG TAT

Gene models with high sequence identity

AT3G08940.2 [+] show detail - light harvesting complex photosystem II
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	Chlorophyll A-B binding protein	3.3e-113
HMMPfam	Chloroa_b-bind	1.2e-48
superfamily	Chlorophyll a-b binding protein	9.7e-60

See the detailed result >

AT3G08940.2

Model type: Protein coding
Short Description: light harvesting complex photosystem II
Curator Summary: Lhcb4.2 protein (Lhcb4.2, protein involved in the light harvesting complex of photosystem II
Computational Description: light harvesting complex photosystem II (LHCB4.2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT5G01530.1); Has 2312 Blast hits to 2241 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1976; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).
Link: InterPro Scan - TAIR