F08211

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08211

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
T2  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: F08211

Determination of introduced cDNA(s)

  • RAFL06-10-N03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-10-N03 - Resource: pda02992

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-10-N03 - full reading
    AAAACAAACA AAAAATCTAG TGTTCGGCTC TAACACGCTC GACGACCATG 
    GCGGTCTCGT TTAATACAAC GCTTCACCAG CCTTCTCTGA GTCCGAGCTG
    TAGCATCAAG CTTTATTCTG GGTTAAAGCC TCAATCTGCA AGCTTTTTGG
    CAAGTGGGTA TCAGAATTTG AACAAGGAGT TCTATGGAAG AGTTTATAAG
    AGTCTGCAAT CTGGGACTGG GAAAGCGAGC AGGTCACGGG TAAAGATGAT
    GCCAATAGGA ACACCGAGAG TACCCTACAG AAACCGAGAA GAAGGGACTT
    GGCAATGGGT TGATATATGG AATGCCCTTT ATCGAGAGCG TGTAATCTTC
    ATTGGACAAA ACATTGATGA AGAGTTTAGC AACCAGATAT TAGCAACCAT
    GTTGTACCTT GATACTCTTG ATGACTCGAG GAGGATTTAT ATGTACCTAA
    ATGGTCCGGG TGGTGATCTT ACTCCAAGTC TAGCCATCTA TGATACAATG
    AAGAGCTTGA AAAGTCCGGT TGGGACACAT TGCGTTGGGC TTGCTTACAA
    CCTTGCAGGT TTTCTTCTTG CGGCTGGAGA AAAGGGTCAC CGATTTGCGA
    TGCCATTATC AAGAATCGCC CTCCAGTCAC CAGCTGGTGC AGCCCGTGGT
    CAGGCTGATG ATATCCAAAA TGAAGCAAAA GAGCTTTCAA GGATAAGAGA
    CTACCTCTTC AATGAACTAG CCAAGAATAC AGGCCAGCCT GCGGAAAGGG
    TCTTCAAAGA CTTGAGCCGG GTGAAAAGGT TCAATGCAGA GGAAGCAATC
    GAGTATGGAC TTATTGATAA GATTGTTAGA CCACCGCGCA TCAAAGAAGA
    CGCTCCTCGC CAAGACGAAA GCGCAGGGCT AGGCTAGTCT TTTTGTTTGT
    TTGTTATGTC AAAAGTTTTA ATCTTTATGT TATTGTGATT GTTACCTAAT
    AAAATCACTG ATTATTGT

    Gene models with high sequence identity

    1. AT1G12410.1 [+] show detail - CLP protease proteolytic subunit 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidase S14, ClpP 1.4e-62
    FPrintScan Peptidase S14, ClpP 4.4e-33
    FPrintScan Peptidase S14, ClpP 4.4e-33
    FPrintScan Peptidase S14, ClpP 4.4e-33
    FPrintScan Peptidase S14, ClpP 4.4e-33
    FPrintScan Peptidase S14, ClpP 4.4e-33
    superfamily ClpP/crotonase 2.1e-43
    HMMPanther Peptidase S14, ClpP 9.1e-66
    Gene3D no description 3.2e-55
    HAMAP CLPP_MF_00444 32.857

    See the detailed result >

    AT1G12410.1

    Model type
    Protein coding
    Short Description
    CLP protease proteolytic subunit 2
    Curator Summary
    Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
    Computational Description
    CLP protease proteolytic subunit 2 (CLP2); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: plastid-encoded CLP P (TAIR:ATCG00670.1); Has 13082 Blast hits to 13064 proteins in 2999 species: Archae - 2; Bacteria - 8275; Metazoa - 145; Fungi - 81; Plants - 1076; Viruses - 67; Other Eukaryotes - 3436 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR