F08215

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08215

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08215

Determination of introduced cDNA(s)

  • RAFL04-17-H07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-H07 - Resource: pda02348

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-17-H07 - full reading 
    AAGTGCCGGC GAACCCTAAG ACTTTTGATA CCTCTTCTCT TCTCTCTCTT 
    CGAAGATGTC TCTCTCTTCC CTCACTCTCG ACTCCAATCC AAGATTCGCT 
    GTTGGTGGAC CTTATCACCG CCGTTATCCT CCTCTTCACC ACCCTCGAAG 
    CTTCGTCTCT TGCTCTGCTA AACGTCCAGC TGTCTCCGCT TCACTGAGCG 
    TCGCCGCTGA TTCAGCCGCC ACTGAGTCTC TTGGACGGAT TGGATCACTG 
    AGTCAAGTAT CTGGTGTACT CGGTTGCCAA TGGGGAGATG AAGGTAAAGG 
    CAAACTCGTT GACATCTTAG CCCAACACTT TGACATCGTT GCTCGTTGTC 
    AGGGTGGAGC TAATGCTGGA CACACTATAT ACAATTCAGA GGGAAAGAAA 
    TTTGCACTTC ACCTTGTGCC TTCAGGTATC CTGAATGAGG ATACTACTTG 
    TGTCATTGGA AACGGAGTTG TGGTGCATTT GCCAGGTCTC TTCAAAGAGA 
    TTGATGGTTT GGAGTCCAAT GGTGTCTCCT GTAAAGGAAG GATTTTGGTC 
    TCTGATCGCG CTCACTTGTT ATTCGATTTC CATCAAGAGG TTGATGGGCT 
    CAGGGAATCT GAGCTTGCCA AGTCGTTCAT TGGCACCACC AAGAGGGGAA 
    TTGGTCCTGC CTACTCTAGT AAAGTGATAA GGAATGGTAT TAGAGTAGGT 
    GATCTCAGGC ACATGGATAC TTTACCTCAA AAGCTTGACC TTTTACTATC 
    AGATGCAGCG GCAAGGTTTC AAGGGTTCAA GTATACTCCT GAAATGCTTC 
    GGGAAGAAGT TGAAGCATAC AAGAGATACG CTGACAGATT GGAGCCCTAC 
    ATTACTGACA CTGTCCATTT CATCAATGAC TCGATTTCGC AGAAGAAAAA 
    GGTTTTGGTC GAAGGTGGTC AAGCTACAAT GTTGGACATT GACTTTGGGA 
    CTTATCCTTT TGTTACTTCC TCCAGCCCCT CAGCCGGTGG GATCTGCACA 
    GGTCTTGGTA TTGCACCAAG TGTTGTTGGT GATCTAATTG GAGTGGTAAA 
    AGCATACACT ACAAGAGTTG GTTCAGGTCC ATTCCCGACA GAAAATTTGG 
    GCACAGGTGG TGACCTTCTT AGGTTAGCTG GACAGGAGTT TGGCACTACA 
    ACTGGTCGTC CTCGTCGGTG TGGCTGGCTT GACATTGTTG CCCTGAAATT 
    TTCTTGCCAA ATCAATGGAT TTGCATCACT TAATCTCACT AAGCTTGATG 
    TACTTTCGGA TCTGAACGAA ATCCAGCTGG GTGTGGCTTA CAAGAGGAGT 
    GACGGCACCC CTGTTAAATC ATTCCCTGGT GATCTTCGTC TTCTCGAAGA 
    ACTGCATGTG GAGTATGAAG TCTTACCTGG GTGGAAGTCT GACATATCCT 
    CGGTCAGAAA CTACTCTGAT CTTCCAAAGG CTGCTCAGCA ATATGTTGAG 
    AGGATTGAAG AACTCGTGGG TGTGCCCATT CATTACATTG GTATTGGGCC 
    CGGTCGTGAT GCCCTTATAT ATAAATGATT TTTAGTGTTA GGCTTTTTTG 
    GTTCCTCCAC AAACTCAAAA ATTGATCAAG TGTCAAGTTA CTGAGAATTA 
    TTACTCTCTT TGGAATGACT AGTGTATCTG TTGCATTGTT TCTAATATTG 
    GAATGAAGAG GAATTCTGTG CTTAAGCAGT GAGGTTGCTA TATTCATAAT 
    GTTTAAGCTT TCGTGTT

    Gene models with high sequence identity

    1. AT3G57610.1 [+] show detail - adenylosuccinate synthase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 6e-169
    HMMTigr Adenylosuccinate synthetase 4.2e-155
    HMMSmart Adenylosuccinate synthetase 7.2e-245
    HMMPanther Adenylosuccinate synthetase 1.1e-238
    HAMAP Adenylosuccinate synthetase 31.735
    PatternScan Adenylosuccinate synthase, active site 0
    PatternScan Adenylosuccinate synthase, active site 0
    HMMPfam Adenylosuccinate synthetase 4.1e-162
    Gene3D no description 7.2e-58
    Gene3D no description 2.7e-59

    See the detailed result >

    AT3G57610.1

    Model type
    Protein coding
    Short Description
    adenylosuccinate synthase
    Curator Summary
    encoding adenylosuccinate synthetase (AdSS), the enzyme involved in the first step of the formation of the purine nucleotide AMP (conversion of IMP to adenylo-succinate)
    Computational Description
    adenylosuccinate synthase (ADSS); FUNCTIONS IN: adenylosuccinate synthase activity; INVOLVED IN: response to cadmium ion, purine ribonucleotide biosynthetic process, AMP biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Adenylosuccinate synthase, active site (InterPro:IPR018220), Adenylosuccinate synthetase (InterPro:IPR001114); Has 10496 Blast hits to 10490 proteins in 2781 species: Archae - 222; Bacteria - 5613; Metazoa - 213; Fungi - 143; Plants - 71; Viruses - 18; Other Eukaryotes - 4216 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR