F08302

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08302

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F08302

Determination of introduced cDNA(s)

  • RAFL06-86-F19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-86-F19 - Resource: pda07740

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-86-F19 - full reading 
    TGACCGCAAC AAAGAAAAAA CAAAAGTTTG AGAAAAATGG TGTGTTCGTT 
    GTGTAACCAA TGATTGGGTT TTAGCTTACT ACTTCGAGAG ATTATAAGAA 
    AGAAAGAGTG AAGATACATT ATAGAAAGAA GAGAAGCAGA AACCAAAAAA 
    AGAAACCATG AAGTCTTTTT GTGATAATGA TGATAATAAT CATAGCAACA 
    CGACTAATTT GTTAGGGTTC TCATTGTCTT CAAATATGAT GAAAATGGGA 
    GGTAGAGGAG GTAGAGAAGC TATTTACTCA TCTTCAACTT CTTCAGCTGC 
    AACTTCTTCT TCTTCTGTTC CACCTCAACT TGTTGTTGGT GACAACACTA 
    GCAACTTTGG TGTTTGCTAT GGATCTAACC CAAATGGAGG AATCTATTCT 
    CACATGTCTG TGATGCCACT CAGATCTGAT GGTTCTCTTT GCTTAATGGA 
    AGCTCTCAAC AGATCTTCTC ACTCGAATCA CCATCAAGAT TCATCTCCAA 
    AGGTGGAGGA TTTCTTTGGG ACCCATCACA ACAACACAAG TCACAAAGAA 
    GCCATGGATC TTAGCTTAGA TAGTTTATTC TACAACACCA CTCATGAGCC 
    CAACACGACT ACAAACTTTC AAGAGTTCTT TAGCTTCCCT CAAACCAGAA 
    ACCATGAGGA AGAAACTAGA AATTACGGGA ATGACCCTAG TTTGACACAT 
    GGAGGGTCTT TTAATGTAGG GGTATATGGG GAATTTCAAC AGTCACTGAG 
    CTTATCCATG AGCCCTGGGT CACAATCTAG CTGCATCACT GGCTCTCACC 
    ACCACCAACA AAACCAAAAC CAAAACCACC AAAGCCAAAA CCACCAGCAG 
    ATCTCTGAAG CTCTTGTGGA GACAAGCGTT GGGTTTGAGA CGACGACAAT 
    GGCGGCTGCG AAGAAGAAGA GGGGACAAGA GGATGTTGTA GTTGTTGGTC 
    AGAAACAGAT TGTTCATAGA AAATCTATCG ATACTTTTGG ACAACGAACT 
    TCTCAATACC GAGGCGTTAC AAGACATAGA TGGACTGGTA GATATGAAGC 
    TCATCTATGG GACAATAGTT TCAAGAAGGA AGGTCACAGT AGAAAAGGAA 
    GACAAGTTTA TCTGGGAGGT TATGATATGG AGGAGAAAGC TGCTCGAGCA 
    TATGATCTTG CTGCACTCAA GTACTGGGGT CCCTCTACTC ACACCAATTT 
    CTCTGCGGAG AATTATCAGA AAGAGATTGA AGACATGAAG AACATGACTA 
    GACAAGAATA TGTTGCACAT TTGAGAAGGA AGAGCAGTGG TTTCTCTAGG 
    GGTGCTTCCA TCTATAGAGG AGTCACAAGA CATCACCAGC ATGGAAGGTG 
    GCAAGCACGG ATTGGTAGAG TCGCTGGAAA CAAAGATCTC TACCTTGGAA 
    CTTTTGGAAC CCAAGAAGAA GCTGCAGAAG CTTACGATGT AGCAGCAATT 
    AAGTTCCGTG GCACAAATGC TGTGACTAAC TTTGATATCA CGAGGTACGA 
    TGTTGATCGT ATCATGTCTA GTAACACACT CTTGTCTGGA GAGTTAGCGC 
    GAAGGAACAA CAACAGCATT GTCGTCAGGA ATACTGAAGA CCAAACCGCT 
    CTAAATGCTG TTGTGGAAGG TGGTTCCAAC AAAGAAGTCA GTACTCCCGA 
    GAGACTCTTG AGTTTTCCGG CGATTTTCGC GTTGCCTCAA GTTAATCAAA 
    AGATGTTCGG ATCAAATATG GGCGGAAATA TGAGTCCTTG GACATCAAAC 
    CCTAATGCTG AGCTTAAGAC CGTCGCTCTT ACTTTGCCTC AGATGCCGGT 
    TTTCGCTGCT TGGGCTGATT CTTGATCAAC TTCAATGACT AACTCTGGTT 
    TTCTTGGTTT AGTTGCTAAG TGTTTTGGTT TATCTCCGGT TTTATCCGGT 
    TTGAACTACA ATTCGGTTTA GTTTCGTCGG TATAAATAGT ATTTGCTTAG 
    GAGCGGTATA TGTTTCTTTT GAGTAGTATT CATGTGAAAC AGAATGAATC 
    TCTCTATAAC ATATTATTTT AATGAATCTC CTTTGCTAAG AAAAAAAAAA 
    AAAAAA

    Gene models with high sequence identity

    1. AT4G37750.1 [+] show detail - Integrase-type DNA-binding superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.5e-26
    HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.8e-34
    Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.4e-11
    Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 4.9e-15
    superfamily DNA-binding, integrase-type 2e-20
    superfamily DNA-binding, integrase-type 3.4e-19
    HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.3e-13
    HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.9e-14
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.2e-06
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.2e-06
    ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 18.755
    ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 18.966

    See the detailed result >

    AT4G37750.1

    Model type
    Protein coding
    Short Description
    Integrase-type DNA-binding superfamily protein
    Curator Summary
    ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.
    Computational Description
    AINTEGUMENTA (ANT); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G72570.1); Has 7251 Blast hits to 5191 proteins in 264 species: Archae - 0; Bacteria - 9; Metazoa - 18; Fungi - 8; Plants - 7086; Viruses - 4; Other Eukaryotes - 126 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR