F08304

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08304

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08304

Determination of introduced cDNA(s)

  • RAFL07-11-J07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-11-J07 - Resource: pda04139

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-11-J07 - full reading 
    TCGCAGATTT TCCTCTCTAG TCTCCGTCTT CTATTACCAG ATCGAGCTTT 
    GTTCTTCGAG CTTCTCATCT CTTTGTTCAA TCTCAAAGGT TCTTGCTGTT 
    TTTCATTTAC AGGTTTTTGA GTATCAGCAA AGATGGGTGA CAATCTTATG 
    GACAAAGTTA CCGCATTTGG TGAGCGCCTG AAGATCGGAG GTTCGGAAGT 
    GAGCAACAAG ATCAGTGCTG GTGTGAGCTC AATGAGCTTT AAAGTGAAGG 
    AACTTTTTCA AGGTCCAAAC CCAACTGATA AAATAGTCGA AGATGCTACT 
    ACTGAGAATC TAGAGGAACC TGACTGGGAT ATGAATTTGG AAATTTGTGA 
    TATGATAAAT CAAGAGACAA TTAATAGCGT TGAGTTGATC CGTGGTATAA 
    AGAAGAGGAT TATGATGAAG CAGCCGAGGA TTCAGTACCT TGCCTTGGTT 
    TTGCTCGAGA CGTGTGTTAA GAACTGTGAG AAGGCGTTTT CAGAGGTGGC 
    AGCAGAGAGA GTCCTTGATG AAATGGTAAA GCTGATTGAT GATCCACAAA 
    CAGTTGTTAA TAACCGAAAC AAAGCTTTGA TGCTGATTGA AGCTTGGGGA 
    GAATCAACCA GTGAACTTCG CTACCTACCA GTTTTCGAAG AAACTTATAA 
    GAGCTTAAAA GCAAGAGGTA TTCGCTTCCC TGGACGAGAC AACGAAAGCT 
    TGGCACCTAT TTTCACTCCT GCTCGGTCAA CTCCAGCACC AGAACTGAAT 
    GCTGATCTTC CTCAGCATGT GCATGAACCT GCACATATCC AGTATGATGT 
    GCCTGTAAGA AGCTTTACTG CTGAGCAGAC AAAGGAAGCT TTTGATATAG 
    CAAGAAACAG CATTGAACTT CTTTCCACGG TTCTGTCCTC CTCGCCTCAA 
    CATGATGCTT TACAGGATGA CTTAACAACG ACACTTGTAC AACAATGTCG 
    TCAATCTCAA ACCACTGTCC AAAGAATCAT TGAAACAGCA GGTGAAAACG 
    AAGCCCTTCT TTTCGAAGCC TTGAATGTGA ACGACGAGCT AGTGAAAACG 
    CTGTCTAAGT ATGAGGAGAT GAACAAACCC TCTGCACCGC TAACCTCACA 
    TGAACCAGCC ATGATTCCCG TTGCTGAAGA GCCCGATGAC TCTCCAATTC 
    ATGGAAGAGA AGAATCTCTG GTTAGAAAAT CTTCTGGTGT TCGAGGTGGA 
    TTCCATGGAG GGGGTGGTAG TGGAGATGAC ATGATGGATG ATCTTGATGA 
    GATGATATTC GGTAAGAAAA ACGGCTGTGA TTCTTCGACT AATCCAGATC 
    ATGACCCAAA AAAGGAGCAG TCCTCATCCA AAAACGACGA TCTCATTCGA 
    TTCTGAGACG GATACTTTCA GGCGACATAA TAAATCTTTT ATAATGTATT 
    TGGTGTTTAA TTGGTAGTAT GAATGAACAG GTTCAATGTA AGTAATCTGT 
    GTTTGGAGAT CTCTTTGACT TGTGTGATGG TTTATAAAGG AGATTTGTTA 
    TGATGGCACA TGAGATTTGA AATACATTCT ATTCTAGTTT CTGCT

    Gene models with high sequence identity

    1. AT5G16880.1 [+] show detail - Target of Myb protein 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan VHS 38.507
    ProfileScan GAT 15.233
    HMMPfam VHS 4.5e-26
    HMMPfam GAT 1.4e-20
    superfamily ENTH/VHS 2.3e-45
    superfamily GAT-like domain 5.7e-28
    Gene3D ENTH/VHS 3.6e-37
    Gene3D no description 0.00062
    HMMPIR Target of Myb protein 1 2e-214
    HMMSmart VHS subgroup 3.4e-27
    HMMPanther TARGET OF MYB1 RELATED (TOM1 - RELATED), PLAN 8.7e-77
    HMMPanther VHS DOMAIN CONTAINING PROTEIN FAMILY 8.7e-77

    See the detailed result >

    AT5G16880.1

    Model type
    Protein coding
    Short Description
    Target of Myb protein 1
    Computational Description
    Target of Myb protein 1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), Target of Myb protein 1 (InterPro:IPR014645), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT1G06210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR