F08325

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08325

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08325

Determination of introduced cDNA(s)

  • RAFL09-50-L05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-50-L05 - Resource: pda06465

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-50-L05 - full reading 
    AAGATTTATA TTCCTCTTAA AAAATAATTT ATTTCCTTCC TAAGAAGAAT 
    TATTAGATTT ATTTTCTTTG CTAGTATAGA TTGATGAAAG TGAGGAAATG 
    GGAGAAGAAA TGAAGAACAC AGGATGTGTC TTCTTCTTCT AAGTCACTAA 
    CAAAATCAAC AAAGAGGAGA AGCCATTATT ATATAATAGA GAGATTGAGA 
    GAAGAGATTT ATCCAAAAAA ATATTGCAAT TCTTCTTGGA GTGAATAATG 
    CCAGTCCCTC TTGCACCATA TCCAACACCT CCGGCACCGG CACTGGCTCC 
    GTCGTACAAC ACTCCTCCGG CAAATGGAAG TACAAGTGGG CAGAGCCAGT 
    TAGTGTGTTC AGGTTGCAGA AACCTTCTGA TGTATCCCGT CGGAGCAACC 
    TCCGTCTGTT GCGCCGTCTG TAACGCCGTC ACGGCCGTTC CTCCGCCCGG 
    AACGGAGATG GCACAGTTGG TATGTGGAGG ATGTCATACA CTCTTAATGT 
    ACATTCGTGG AGCTACAAGT GTTCAATGTT CTTGTTGTCA CACTGTTAAT 
    CTCGCCCTCG AAGCAAACCA AGTAGCGCAT GTGAATTGCG GAAACTGCAT 
    GATGCTACTA ATGTATCAAT ATGGAGCAAG ATCAGTGAAA TGTGCCGTTT 
    GTAACTTTGT CACATCTGTT GGGGGTTCAA CGAGCACGAC TGATTCGAAG 
    TTTAACAATT AAAACTTGGA TCTATCTACC TATCAATACA TATTGAGTTA 
    TGAGCAATAT AGAGGAAGCA TCAAATCTTT TTCACTCTCT CTTCGATCAA 
    GAATCCGGCA GTGATGAGTT TGAAACCATT TTCGGAAGTA AATGAAATAT 
    GTAATTCGTC GAAATTTCTG ACTTTGGTCT CTTTGTCCGT TTGTATAGAG 
    CTATCTCTCT TCTTTGGTTT TTGTTTTGTT CTCTTAAGAA AAATTTGATT 
    CACCAGTTTG TAAGAGTGAT TCAGAAATCA AAGCTAGACT TTTTATGCAT 
    G

    Gene models with high sequence identity

    1. AT1G32540.2 [+] show detail - lsd one like 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Zinc finger, LSD1-type 1.2e-09
    HMMTigr Zinc finger, LSD1-type 3.7e-11
    HMMTigr Zinc finger, LSD1-type 1e-07
    HMMPfam Zinc finger, LSD1-type 3e-12
    HMMPfam Zinc finger, LSD1-type 2.4e-12
    HMMPfam Zinc finger, LSD1-type 2.8e-10

    See the detailed result >

    AT1G32540.2

    Model type
    Protein coding
    Short Description
    lsd one like 1
    Curator Summary
    Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.
    Computational Description
    lsd one like 1 (LOL1); CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LSD1 zinc finger family protein (TAIR:AT4G20380.7); Has 253 Blast hits to 202 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR