F08330

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08330

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08330

Determination of introduced cDNA(s)

  • RAFL06-86-D19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-86-D19 - Resource: pda07738

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-86-D19 - full reading 
    AACTTATGTT TCTATGGTTT CTTGCGTATC ACGGTTGAAT TTTATAGGTA 
    CAACATTGAA TTATTTCTTG GACAACAAGA TAAACAAAGC CGAGATCCTC 
    TTCCCTGGCG TAGGTTGCTT CTTGATCGCT GTTTTCCTAG GCGCTGCGGT 
    TCATGCTTCT AATGCAGCTG ATGTCAAAGA GAAACTCAAG TCTTTACCTA 
    GCGAGTATAA AGCTGAGACA AACTAAGATG TTGCTCTTTC TTTTGCCTTT 
    GTTCCATGTT TTAAAAATGT TTTAACAAAA CTCTGATCTT TTTCAGAGAT 
    TTATATTCTT CTATTGAAAA TGGTGAAGAC AAGCCTGAAA TAGGTAAAAC 
    CATGAACAGA GAAAACTGAT GTCGAATCTC AAGAGAAACT CGCGGAAAAG 
    GCGAAAGCAG GGACGGCAGG ATTCTATGTA GAGCTAGAGA ACAAAAGAGC 
    AATCAAGGTT CAATTACAAT GACCAAGAGA AAAACCTTTA GCAAGATTAC 
    GTAGCAAAGG AGAGTATACA ACTACTCTCG GTGCTTAAAA CCTCATCAAT 
    GCGCAGGTCT TTGGAAAAAG CATAATGATC GGACTATTCA TAACGCTGTT 
    CGCGGGAATC AGCCTTTCTC TATTCTCTCC TGCATTCAAC TTGGCAACAA 
    ACGATCAATG GAGTAC

    Gene models with high sequence identity

    1. AT2G03520.1 [+] show detail - ureide permease 4
      E-value: 2e-84; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G03520.1

    Model type
    Protein coding
    Short Description
    ureide permease 4
    Curator Summary
    Encodes AtUPS4, a member of the Arabidopsis ureide permease family.
    Computational Description
    ureide permease 4 (UPS4); LOCATED IN: chloroplast; EXPRESSED IN: stigma, seedling, fruit, filament, seed; BEST Arabidopsis thaliana protein match is: ureide permease 1 (TAIR:AT2G03590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR