F08403

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08403

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08403

Determination of introduced cDNA(s)

  • RAFL21-01-E14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL21-01-E14 - Resource: pda11733

    full reading [+] show sequence

    Nucleotide sequence: RAFL21-01-E14 - full reading
    TTCCTTTCCC TTTTTGGCGC TCAATACAAT CATGACGTTA GAGAGTTACG 
    CCGGCGATGT TCACACGGTA CCACAATCGG AGAACTCGAT GGAGGAGAGA
    GGCGGCGGTG AGCTTTTCGT GCCACCTCTT AACTTCGCTA TGGTCGATAA
    TGGAATTTTC CGTTCTGGTT TTCCTGAACC CGTCAGTTTC AGCTTTCTCC
    AGTCTTTGCG TCTCAAATCC ATCATATATT TGTGTCCTGA GGCATATCCA
    GAGGTGAATA GAGAGTTTGC AAAATCAAAT GGGATCCAAG TTTTTCAATT
    TGGAATTGAA AGATGCAAGG AACCATTTGT TAATATCCCT GACGAGGTAA
    TCCGAGAAGC CTTACAAGTA CTTCTAGATA CAGAGAATCA TCCTGTCTTG
    ATTCATTGCA AAAGTGGAAA GCATCGGACG GGATGTCTTG TAGGTTGTGT
    GAGGAAGATT CAAAGATGGT GTTTGTCTTC TATCTTCGAC GAGTACCAAA
    GATTCGCAGC TGCGAAAGCT AGAATCTCAG ACCAGAGATT CATGGAGCTC
    TTTGACATCT CCAATCTAAA GCATACACCA CTTTCCTTCT CATGCTCCAA
    GAGGTATACT AATACTATTG ATTACTGAAG AAAAAAATGT ATAACTTTGT
    GTTGAATGCA ACTTGTAGTT TTGAAGCTAG ATGAAAATGG GAGATTTTGA
    TCTTTCAATA AAAGTCCGTT TATTCCAAAT CT

    Gene models with high sequence identity

    1. AT4G03960.1 [+] show detail - Phosphotyrosine protein phosphatases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Dual-specific/protein-tyrosine phosphatase, conserved region 9.132
    FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 7.5e-30
    FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 7.5e-30
    FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 7.5e-30
    FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 7.5e-30
    HMMPfam Protein-tyrosine phosphatase, SIW14-like 2.2e-60
    superfamily (Phosphotyrosine protein) phosphatases II 6.4e-24
    PatternScan Protein-tyrosine phosphatase, active site 0
    Gene3D no description 4.1e-57

    See the detailed result >

    AT4G03960.1

    Model type
    Protein coding
    Short Description
    Phosphotyrosine protein phosphatases superfamily protein
    Computational Description
    Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic (InterPro:IPR020428), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT1G05000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR