F08408

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08408

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F08408

Determination of introduced cDNA(s)

  • RAFL08-19-M09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-19-M09 - Resource: pda05034

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-19-M09 - full reading 
    GATCTCATTT GCTCTGCAAT GGCGACTACC ATGAATGCTG CTGTTTCTCT 
    CACATCTTCA AACTCTTCTT CTTTTCCCGC TACAAGTTGT GCCATTGCTC 
    CTGAAAGGAT CAGGTTTACT AAGGGTGCTT TTTACTACAA AAGCAACAAT 
    GTAGTGACAG GTAAAAGAGT GTTTTCCATA AAAGCACAAA TCACAACAGA 
    AACAGATACT CCTACTCCTG CAAAGAAAGT AGAGAAAGTG TCAAAGAAGA 
    ACGAGGAAGG TGTGATTGTT AACAGGTACA GACCAAAAGA GCCTTACACT 
    GGAAAATGCC TTCTCAACAC CAAAATCACA GCTGATGATG CTCCTGGAGA 
    GACCTGGCAC ATGGTTTTCA GCCATCAAGG AGAAATCCCG TACAGAGAAG 
    GACAATCTGT TGGTGTGATT GCAGATGGAA TTGACAAGAA TGGAAAGCCT 
    CACAAGGTCA GACTTTACTC CATTGCAAGC AGCGCTCTTG GAGATCTCGG 
    CAATTCTGAA ACCGTTTCTT TGTGTGTTAA AAGACTTGTT TATACTAATG 
    ACCAAGGAGA GACTGTTAAA GGAGTTTGCT CAAATTTCTT GTGTGATTTG 
    GCACCCGGAA GTGATGTTAA GCTGACTGGT CCTGTAGGCA AAGAAATGCT 
    TATGCCAAAG GATCCAAACG CCACCGTTAT TATGCTTGCC ACAGGGACAG 
    GAATTGCTCC TTTCAGGTCT TTCTTATGGA AGATGTTCTT TGAGAAACAT 
    GATGACTACA AGTTCAATGG CTTAGCTTGG TTGTTCTTGG GTGTACCAAC 
    CACTAGCTCT TTGCTCTACC AAGAGGAGTT TGATAAGATG AAAGCAAAGG 
    CCCCCGAGAA CTTCAGGGTG GATTACGCGA TAAGCAGAGA ACAAGCGAAC 
    GATAAAGGAG AGAAAATGTA TATCCAGACT CGGATGGCGC AATACGCAGC 
    TGAGTTATGG GAGTTGTTGA AGAAAGACAA CACTTTTGTT TACATGTGTG 
    GACTCAAGGG AATGGAGAAA GGAATTGATG ACATTATGGT CTCATTGGCT 
    GCAAATGACG GTATTGACTG GTTTGATTAC AAGAAGCAGT TGAAGAAGGC 
    AGAGCAATGG AACGTTGAAG TCTACTGATC AAAAAGCCTT TGACATTTCT 
    GTAGCAAAGT ATAGCTGAAC AAAACTGTAA TTTTCGCTTC TGAATTTCTG 
    TATTTTGAAG ATAAGTTTTT TAGATATGTT ATACTAAAAA AAGAGTTCTT 
    TAATCATTAT CATTTACTTC TTCC

    Gene models with high sequence identity

    1. AT1G20020.1 [+] show detail - ferredoxin-NADP(+)-oxidoreductase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.7e-26
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.7e-26
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.7e-26
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.7e-26
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.7e-26
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.7e-26
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.7e-26
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.7e-26
    HMMPanther Ferredoxin Reductase 4.9e-138
    HMMPanther FLAVODOXIN-RELATED 4.9e-138
    HMMPIR Ferredoxin--NADP reductase 4.1e-275
    Gene3D no description 1.4e-48
    Gene3D no description 2e-46
    superfamily Ferredoxin reductase-like, C-terminal NADP-li 2.5e-53
    superfamily Riboflavin synthase-like beta-barrel 2.9e-42
    HMMPfam Oxidoreductase FAD/NAD(P)-binding 8.8e-28
    HMMPfam Oxidoreductase, FAD-binding domain 0.00012
    ProfileScan Ferredoxin reductase-type FAD-binding domain 13.094

    See the detailed result >

    AT1G20020.1

    Model type
    Protein coding
    Short Description
    ferredoxin-NADP(+)-oxidoreductase 2
    Curator Summary
    Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma
    Computational Description
    ferredoxin-NADP(+)-oxidoreductase 2 (FNR2); FUNCTIONS IN: oxidoreductase activity, poly(U) RNA binding, NADPH dehydrogenase activity; INVOLVED IN: oxidation reduction, defense response to fungus, incompatible interaction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 1 (TAIR:AT5G66190.1); Has 6774 Blast hits to 6774 proteins in 1708 species: Archae - 20; Bacteria - 3604; Metazoa - 802; Fungi - 759; Plants - 616; Viruses - 0; Other Eukaryotes - 973 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR