F08410

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) dark green (PATO:0001249) (Rosette leaf::Color::dark)
	stem (PO:0009047)	dark green (PATO:0001249) (Stem::Color::dark) abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few) dark green (PATO:0001249) (Cauline leaf::Color::dark)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	root (PO:0009005)	present in greater numbers in organism (PATO:0000470) (Root::Number::many)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick) abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08410

Determination of introduced cDNA(s)

RAFL09-14-J21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-14-J21 - Resource: pda01771

full reading [+] show sequence

AAGTTGAAAT TCTGATTAGG GTCTTCCTCG ATTCGCTTTT GGTGAATCAA 
ATTTCTTTAA TTTCAGTGAA TACGCTTTTG ACAGGAGGAC CATACTAAGT 
CTTGGGAAAA CCCTCTTCAT AGTGGGTTTG ATCTACAATG ATGTATCAGA 
CAATTCCCAC GGCACCAACC ATTCGTGGTG GAACTCCAAC AGAGAGTGGT 
GATTACGTTG TGACTTTGGA TCAGATTCCA CGGTGGAGTG ATGTTGAGCA 
GAGATCATCT TTGGAGGATG AGACAGGAGA TCCAGAACAT TCGAATCCGC 
GCTACGCAAA CCCTTTGGCT TCGTCTTCCG AAGCAGGGAG CAGCGGGAAT 
GGGATGGTAT CTAAGTTTCC TGTTGATCAC GAGATAAACT CTAGAATATA 
CCTTTGGAGA GGGGAACCTT GGAACCTTGA GGTTGATGCT GTTGTAAATT 
CGACAAATGA GAACTTGGAT GAGGCACATA GCAGTCCTGG TCTACATGTG 
GCTGCTGGAC CTGGCCTTGC AGAGCAATGT GCTACATTGG GTGGATGCAG 
GACAGGGATG GCGAAAGTAA CAAATGCCTA TGATCTACCA GCGAGGAGGG 
TTATCCATAC AGTAGGACCC AAGTATGCAG TAAAGTATCA TACAGCTGCT 
GAGAATGCTC TAAGTCACTG CTATAGATCT TGTCTGGAAC TTCTCATAGA 
TAGTGGGCTA CAAAGTATCG CTCTGGGCTG TATATACACA GAAGCCAAAA 
ACTATCCCCG AGAACCAGCT GCTCATGTTG CCATAAGAAC TGTTCGCCGC 
TTTCTAGAGA AGCAAAAGGA TAAAATCAGT GCCGTTGTTT TCTGTACCAC 
CACATCCTCT GATACGGAGA TATACAAACG ATTACTTCCA CTTTACTTTC 
CTCGAGATGA ACATGAGGAA GAGGTTGCCA TATCAAAGCT CCCGGCTGAT 
GTTGGAGATG AAAATGGTGA GACGGTTATA GACGAACGTA AAATCAGAAT 
ACAGGCGCTG CCAAATAAAC CTCCACCCAG ATCTTTTCCA ACTCCACTCG 
AGCGCCCTTC TACTGATCTT ACTTTGTTAC GCAGGAACTC GAATCATCTT 
GATTCGTATT TGGATCCTGC CTTCATGTCC TTGATTAAGG ATCCAGATGA 
AAGGCGCAAA GAACAATGGG AGAAGACTGC ACAAGCACAA AGTGGATTCA 
ATTTTGTTAA ATTGCTAGGA TTTGGTGATC TAGGAGGACC CCCTCTCTCT 
GCTGCAGAGG AATACTCACT TCATTCGCGA TACCTAGCGA AAGCTAATTC 
AATCAACCTT TCCGAGATTG CAGAGATGAA AATTGTCTAT CGTGGTGGTG 
TTGACACCGA GGGTCATCCT GTAATGGTTG TTGTAGGAGC TCACTTTTTG 
CTGCGATGTC TTGATCTGGA GCGTTTTGTA CTTTATGTTA TTAAGGAATT 
TGAACCTGTG ATACAAAAGC CTTATTCGAT TGTCTACTTT CATTCTGCAG 
CATCGTTACA AGTCCAACCA GATTTGGGAT GGATGAAAAG ATTAGAACAG 
ATACTTGGTC GAAAACACCA GCGTAACCTT CAGGCAATCT ATGTTCTTCA 
TCCAACTTTC CACTTGAAGG CTACAATCTT AACGATGCAA TTTTTCGTGG 
ATAATGTGGT ATGGAAGAAA GTTGTATATG CAGACCGACT TCTGCAGCTG 
TTCAAATACG TTCCTCGTGA GCAGCTGACA ATCCCAGACT TTGTTTTCCA 
GCATGATCTT GAAGTTAACG GAGGAAAAGG TCTAATCGTT GACCCAAGAA 
CAAAATACGT TTATCAACGG CCATGAACCA AAATCAAAGA CCGTTACTTT 
ATTCAGTACT TGTATGTTTG CTTGTGAAAT ATTTCTTCAT TCTTTCATGC 
TTATCTTCTC AAGATGATCC TGGGAGCAAA TAAAGTCTTC TTCTTCTTCT 
AATGTAATCT AAAGTTTGAA TCTTTTTGTT TATAAATCCA TTTTCTCAGC 
ACAC

Gene models with high sequence identity

AT1G69340.1 [+] show detail - appr-1-p processing enzyme family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Appr-1-p processing	0.000000033
HMMSmart	Cellular retinaldehyde-binding/triple function, C-terminal	0.00000064
HMMPanther	GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATE	0
HMMPanther	GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATE	0
Gene3D	no description	7.8e-44
ProfileScan	Appr-1-p processing	22.212
HMMPfam	Appr-1-p processing	6.6e-24
superfamily	Macro domain-like	1e-40
superfamily	Cellular retinaldehyde-binding/triple function, C-terminal	0.000000000000022

See the detailed result >

AT1G69340.1

Model type: Protein coding
Short Description: appr-1-p processing enzyme family protein
Computational Description: appr-1-p processing enzyme family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Appr-1-p processing (InterPro:IPR002589); BEST Arabidopsis thaliana protein match is: appr-1-p processing enzyme family protein (TAIR:AT2G40600.1); Has 3597 Blast hits to 3538 proteins in 1210 species: Archae - 64; Bacteria - 1971; Metazoa - 984; Fungi - 140; Plants - 224; Viruses - 8; Other Eukaryotes - 206 (source: NCBI BLink).
Link: InterPro Scan - TAIR