F08419

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08419

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F08419

Determination of introduced cDNA(s)

  • RAFL09-06-H02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-06-H02 - Resource: pda05087

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-06-H02 - full reading 
    ATCATCATCA TCATCATTCA TAACCACTTA GCCACAGATG CGATTTTCTT 
    CTCCTTCTTC ATTGTGCTCT TCAACACTTA TGAACAAGAG CACCACCACC 
    ACGACAACGA CGACTACAAA GACCAAAGCT TTCGTTTTGT GTTTCTGATT 
    TTGATTCGAT TTTGATGCTC ATCGAAGAGA ACCCTTGATT TTGTTGCTGT 
    AGTTCATAGA GATTTTACAC ATTTTGTGGA ATTTAGTGGA TTTATGATGA 
    TGGGTAGGTT AGTTTTTGTA ATCTGGCTCT ATAATTGTCT CTGTTTGCTG 
    CTACTCTCGA GCTTGGTTGA CGCGGATCAG GCCAACATAG ATTGCTTAAG 
    GACCTTTAAA TCTCAAGTAG AGGATCCAAA TAGATATTTA TCGACTTGGG 
    TTTTTGGCAA CGAGACTGCT GGTTATATCT GCAAGTTCAG TGGTGTGACT 
    TGTTGGCATG ATGATGAGAA TAGGGTTTTG AGTATTAAGC TATCTGGTTA 
    TGGTCTTAGA GGAGTGTTTC CTCCTGCGGT TAAGCTATGT GCTGATCTCA 
    CTGGTTTAGA TCTTTCTAGA AACAACTTCT CTGGACCTTT ACCAGCCAAC 
    ATTAGCACCT TGATTCCACT TGTTACGATT CTAGACCTCT CCTACAATAG 
    CTTCTCTGGT GAAATCCCTA TGTTGATCTC CAACATTACC TTTTTGAACA 
    CTCTTATGCT TCAGCATAAC CAGTTCACGG GTACTCTTCC TCCCCAGCTA 
    GCGCAACTTG GACGGCTCAA AACATTCTCT GTGTCTGACA ATCGTCTCGT 
    TGGTCCTATC CCAAATTTCA ACCAAACCTT GCAGTTTAAG CAGGAATTGT 
    TTGCTAATAA CCTGGATCTG TGTGGTAAGC CTCTAGATGA CTGTAAGAGT 
    GCTTCTAGCT CTCGTGGTAA AGTTGTTATT ATAGCGGCAG TTGGTGGACT 
    GACTGCAGCA GCATTAGTCG TTGGGGTTGT TTTGTTCTTC TATTTCCGTA 
    AATTGGGTGC TGTTCGGAAG AAGCAGGATG ATCCTGAAGG AAACAGATGG 
    GCAAAGAGCT TGAAAAGACA GAAAGGTGTT AAGGTTTTCA TGTTTAAGAA 
    ATCGGTTTCA AAGATGAAAT TAAGCGATCT TATGAAGGCA ACAGAGGAAT 
    TCAAGAAAGA TAATATCATT GCAACAGGAA GAACAGGAAC TATGTACAAA 
    GGTAGGCTTG AAGACGGGTC TCTACTTATG ATAAAGAGGT TGCAGGATTC 
    TCAACGCTCT GAGAAAGAGT TTGATGCAGA GATGAAGACT TTGGGCTCTG 
    TTAAAAACAG AAACTTAGTC CCTCTCTTGG GCTATTGTGT TGCCAATAAG 
    GAGAGGCTTC TAATGTATGA GTACATGGCA AACGGTTACC TTTATGATCA 
    GTTACATCCT GCAGATGAAG AATCCTTCAA GCCCTTGGAT TGGCCTTCAA 
    GGCTGAAAAT CGCGATTGGG ACGGCAAAAG GATTGGCATG GCTTCATCAT 
    AGCTGCAACC CGAGAATCAT CCATCGCAAC ATAAGCTCGA AATGCATATT 
    GTTGACTGCA GAGTTTGAGC CAAAGATCTC GGATTTCGGT CTAGCTAGGC 
    TGATGAACCC AATTGATACC CATTTAAGCA CATTCGTCAA TGGAGAATTT 
    GGGGATTTCG GTTATGTTGC TCCCGAGTAT TCAAGAACCA TGGTTGCAAC 
    TCCAAAAGGA GATGTCTACA GCTTCGGTGT TGTGCTTCTA GAGCTAGTAA 
    CGGGCCAAAA AGCAACGAGT GTAACAAAAG TATCTGAAGA AAAAGCTGAG 
    GAAGAAAACT TCAAGGGTAA CCTCGTGGAA TGGATTACAA AGCTATCAAG 
    TGAATCAAAA CTGCAGGAAG CAATCGACAG GTCCTTACTT GGGAACGGTG 
    TGGATGATGA AATCTTCAAA GTACTCAAAG TAGCATGCAA CTGCGTTCTA 
    CCGGAAATAG CAAAGCAGAG GCCAACCATG TTTGAAGTTT ATCAGCTTCT 
    AAGAGCCATT GGAGAGAGCT ACAACTTCAC CGCCGATGAT GATATCTTAA 
    TCCCATCTGA ATCAGGTGAA GGCGATTTCA TTGAAGAGCT CATAGTTGCT 
    CGTTGATCAA GAGGAAGGGT AAGAATTGTG AAACAAACAT CTCTAGTCGT 
    AGCAGTCCAA AGATATATAT AATGTATAAG TATTGTTTTT ATTTTATTTT 
    TGGGTTCTCG T

    Gene models with high sequence identity

    1. AT5G48380.1 [+] show detail - BAK1-interacting receptor-like kinase 1
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Serine/threonine-protein kinase domain 1.6e-10
    HMMSmart Tyrosine-protein kinase, catalytic domain 2.3e-12
    HMMPanther RECEPTOR-LIKE PROTEIN KINASE 3.1e-300
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3.1e-300
    Gene3D no description 4.1e-32
    Gene3D no description 4.1e-14
    Gene3D no description 2e-41
    ProfileScan Protein kinase, catalytic domain 27.637
    HMMPfam Serine-threonine/tyrosine-protein kinase 6.3e-34
    HMMPfam Leucine-rich repeat 0.97
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 0.00013
    superfamily Protein kinase-like domain 2.3e-65
    superfamily L domain-like 1.6e-29

    See the detailed result >

    AT5G48380.1

    Model type
    Protein coding
    Short Description
    BAK1-interacting receptor-like kinase 1
    Curator Summary
    Encodes a BAK1-interacting receptor-like kinase named BIR1. Negatively regulates multiple plant resistance signaling pathways, one of which is the SOBIR1(AT2G31880)-dependent pathway.
    Computational Description
    BAK1-interacting receptor-like kinase 1 (BIR1); FUNCTIONS IN: protein kinase activity; INVOLVED IN: negative regulation of defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G28450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR